hpa_downloaded_histology_v18 {HPAanalyze} | R Documentation

## HPA histology dataset version 18

### Description

Dataset downloaded with `hpaDownload('histology', version = 'v18')`. This dataset is kept for the sake of backward compability. Please use 'hpa_histology_data' for the most updated built-in dataset.

### Usage

    hpa_downloaded_histology_v18

### Format

A list of 3 tibbles

normal_tissue

  Normal tissue IHC data

pathology

  Cancer IHC data

subcellular_location

  Subcellular location IF data

### Details

Links to original data:

- https://v18.proteinatlas.org/download/normal_tissue.tsv.zip

- https://v18.proteinatlas.org/download/pathology.tsv.zip

- https://v18.proteinatlas.org/download/subcellular_location.tsv.zip

### See Also

`hpaDownload` `hpa_histology_data`

### Examples

      # load data
      data("hpa_downloaded_histology_v18")

      # access data frames
      normal_tissue_data <- hpa_downloaded_histology_v18$normal_tissue
      cancer_data <- hpa_downloaded_histology_v18$pathology
      subcell_location_data <- hpa_downloaded_histology_v18$subcellular_location

[Package HPAanalyze version 1.8.1 Index]