GSEAGO_Builder {GmicR} | R Documentation

## GO enrichment for module names

### Description

GO enrichment for module names

### Usage

    GSEAGO_Builder(
      Auto_WGCNA_OUTPUT,
      species = "Homo sapiens",
      no_cores = 4,
      ontology = "BP",
      GO_conditional = FALSE,
      colname_correct = TRUE
    )

### Arguments

`Auto_WGCNA_OUTPUT` | output from Auto_WGCNA function.
`species` | either 'Homo sapiens' (default) or 'Mus musculus'.
`no_cores` | Number of cores to use. Default = 4.
`ontology` | string either 'BP'(Biological Process; default), 'CC'(Cellular Component), or 'MF' (Molecular Function).
`GO_conditional` | A logical indicating whether the calculation should condition on the GO structure. will not be carried out. If TRUE,
`colname_correct` | a logical value. If TRUE (default), "." in gene names will be replaced with "-". This corrects a name change that is induced by R when creating a data.frame. If FALSE, no changes will be made.

### Value

Lists with gene ontology enrichment analysis, performed using GOstats, for each module.

### Note

gene names must be official gene symbol

### Examples

    GMIC_Builder_dir<-system.file("extdata", "GMIC_Builder.Rdata",
                                  package = "GmicR", mustWork = TRUE)
    load(GMIC_Builder_dir)
    GMIC_Builder$GSEAGO_Builder_Output<-NULL
    Test_GMIC_Builder<-GSEAGO_Builder(GMIC_Builder, no_cores = 1)
    summary(Test_GMIC_Builder$GSEAGO_Builder_Output)

[Package GmicR version 1.4.0 Index]