xCell_loader {GmicR} | R Documentation

## Scales and centers data by sample/row in preparation for discretization

### Description

Scales and centers data by sample/row in preparation for discretization

### Usage

    xCell_loader(File = NULL)

### Arguments

`File` | the name of the text file generated by xCell that contains the cell signature scores.

### Value

xCell signatures scaled and centered by sample. For GMIC, ImmuneScore, StromaScore, and MicroenvironmentScore are removed.

### Examples

    file_dir<-system.file("extdata", "IRIS_xCell_sig.txt",
    package = "GmicR", mustWork = TRUE)
    Xcell_sig<-xCell_loader(file_dir)
    plot(Xcell_sig$Bcells)

[Package GmicR version 1.4.0 Index]