gtoxPlotM4ID {GladiaTOX} | R Documentation

## Plot fit summary plot by m4id

### Description

`gtoxPlotM4ID` creates a summary plots for the given m4id(s) by loading the appropriate data from the gtox databases and sending it to `gtoxPlotFits`

### Usage

    gtoxPlotM4ID(m4id, lvl = 4L, bline = "bmad")

### Arguments

`m4id` | Integer, m4id(s) to plot
`lvl` | Integer, the level of data to plot
`bline` | Character of length 1, the value used for drawing the baseline noise

### Details

A level 4 plot ('lvl' = 4) will plot the concentration series and the applicable curves, without an indication of the activity call or the winning model. Level 4 plots can be created without having done subsequent processing.

Level 5 plots include the level 4 information with the activity call and model selection. The winning model will be highlighted red in the side panel containing the summary statistics. Level 6 plots, in addition the all of the level 4 and 5 information, include the positive flag IDs. If the flag has an associated value, the value will be in parentheses follwing the flag ID.

Any values for 'bline' other than 'coff' will use 3*bmad.

### Value

None

### See Also

`gtoxPlotFits`, `gtoxMakeAeidPlts`

### Examples

    ## Store the current config settings, so they can be reloaded at the end
    ## of the examples
    conf_store <- gtoxConfList()
    gtoxConfDefault()

    acnm <- "Cytotoxicity (TIER1)_Cytochrome C release_24h"
    pltnm <- "S-000049119"
    myaid <- gtoxLoadApid()[u_boxtrack == pltnm, aid]
    myaid <- myaid[myaid%in%gtoxLoadAid(fld = "asid", val = 1L)$aid]
    apid <- gtoxLoadApid()[u_boxtrack == pltnm & aid == myaid, apid]
    acid <- gtoxLoadAcid(fld = c("aid", "acnm"), val = list(myaid, acnm))[, acid]

    aeid = gtoxLoadAeid(fld = c("acid", "analysis_direction"),
    val = list(acid, "up"))[,aeid]
    spid = gtoxLoadWaid(fld = c("apid", "wllt"),
    val = list(apid, "c"))[,unique(spid)]
    m4id = gtoxLoadData(lvl = 4L, fld = c("spid", "aeid"),
    val = list(spid, aeid))[, m4id]

    gtoxPlotM4ID(m4id = m4id, lvl = 6, bline = "coff") ## Create a level 4 plot
    gtoxPlotM4ID(m4id = m4id, lvl = 5) ## Create a level 5 plot
    gtoxPlotM4ID(m4id = m4id, lvl = 6) ## Create a level 6 plot

    ## Reset configuration
    options(conf_store)

[Package GladiaTOX version 1.6.1 Index]