a345767320ea362a3c159e425679ad5d *CITATION
b7f0b1310f39186021b8e72717c6ce7f *DESCRIPTION
04ccdbaca6b434a28847abc114122545 *INDEX
f3aa1dffc6cc00de429b1c0476e917b5 *Meta/Rd.rds
4a6920eac0f49aeb737a2ad6e91c8fa1 *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
83e532c6306d52548c0735c91b41efa9 *Meta/hsearch.rds
86a427ecd337bb06aef471a889262257 *Meta/links.rds
a18eee6c90bc2118a7c59b0a56a0cbf2 *Meta/nsInfo.rds
14c1eb2bdd76e4922d433670b43dd254 *Meta/package.rds
4c231496a326b2932536e0a1e1ef4388 *Meta/vignette.rds
b603f7a9626d42caae572262a9d9824a *NAMESPACE
72ecd186ff9413b48ea2929bb815ed34 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GenomicInteractions
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f637ef7649bc14a63ec1b529704c0254 *R/GenomicInteractions.rdx
398558e5248b1a617c42f5fe6c1ad024 *data/hg19.refseq.transcripts.rda
d976d748baf9338534b53095b4433f0f *data/hic_example_data.rda
e738b2c892fd3a5023e8d0a9cc9dc787 *data/mm9_refseq_promoters.rda
f3be44c2045c0287f3e042d3e80a710b *data/thymus_enhancers.rda
225fe3b2ad316e214b5a54366aa18210 *doc/chiapet_vignette.R
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d0416f72a012ca734a7171f6838caf66 *doc/chiapet_vignette.rmd
8f4576836a31714d7f8e58a3e2dd1de7 *doc/hic_vignette.R
a27415a65a53e55897ac0c2ee5ec9f52 *doc/hic_vignette.Rmd
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adc8c65e7510394df1e46053c58796db *extdata/k562.rep1.cluster.pet3+.txt
737c74fca5b7b894901f6c3695a6a680 *help/AnIndex
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1c3ad4f345a4befa44ddf4601ff4232f *help/GenomicInteractions.rdx
cfc9aaaeb3f77c6c99d4b7b1de2b4002 *help/aliases.rds
ce7996df1bd52003e62eb3b8e755cb80 *help/paths.rds
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126021d88d4b0c0333c738942e444ee0 *html/GInteractions-subsetByFeatures-methods.html
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ed6a1d2a4ca87040cee8cd220e8fca6a *html/GenomicInteractions.html
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8f377965348d3b0945d6668dfbccbd19 *html/InteractionTrack-class.html
4067c717f25bc8efb735ca1f91a44bf1 *html/InteractionTrack.html
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2592eeaba6eb9e3f307172afd84c90a1 *html/annotateInteractions.html
840e1a491faff24597c03b09e2a0e615 *html/annotateRegions.html
9ec2fd079d5873ca5dd32b3266c528ab *html/asBED-GInteractions-method.html
bece6fe7e2f0726bf12db5a054dac088 *html/availableDisplayPars.html
ad9a68a7471ef240d5de0548e9f833c0 *html/calculateDistances.html
cdd8c5d246678c335271815adc6a1f8a *html/categoriseInteractions.html
84d2f1e1675d80b2819546eff49b4a56 *html/countsBetweenAnchors-methods.html
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1a277b7507fba5879ef5044ad741b7d4 *html/dot-processChiapetName.html
4d11f12dc0e8fbcc1032344d52ec0d0a *html/dot-readBam.html
f24e1dd301bf92fedb1d2dd4d169450b *html/dot-readTwoBams.html
c78bf7074c15636cdf1dacaae449156d *html/dot-validateInput.html
c6f3e9153987696d8e63f0de01b5259e *html/export.bed12.html
5fee5dee782a97028e10350929c127b4 *html/export.bedpe.html
1e223a8c19e16a3d585a3ba1a1148269 *html/export.chiasig.html
a0cfb9f6cea14d74a6df38171beed80a *html/export.igraph.html
29d35c8645d73e89a178128667c26a30 *html/get_binom_ligation_threshold.html
96663179bf11aef55d155b85c938bc39 *html/get_self_ligation_threshold.html
4c42ebde83b3ca15e353e0f9cde0dc2d *html/getters.html
4efcab2e5a0dd02d3b276a54b901174d *html/hg19.refseq.transcripts.html
0dad8316f250f9e87095e91655af6cd9 *html/hic_example_data.html
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fff74a6f44cb16101079bb42591e4c56 *html/mm9_refseq_promoters.html
49f76be56b3dc07e676859cfd6a49f30 *html/plotAvgViewpoint.html
685d0d43e7a6ef0d2fb710a0fffbf75c *html/plotCisTrans.html
f87ede0090967a4f294628e201578064 *html/plotCounts.html
c9be8ff83d65691e3f6eb3dc7f5d9ad0 *html/plotDists.html
df88042adbaa8a458e6cdd00e6681c02 *html/plotInteractionAnnotations.html
4bbfe6fafe710fddfe97753b8697bd60 *html/plotSummaryStats.html
1284a040a23b0484dac178d17bc922b3 *html/plotViewpoint.html
32ce20ae48ac01f5e1f1810b735bacfc *html/removeDups.html
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d8e6c4a8afd600fe0f822fa466ba9ee7 *html/sameStrand.html
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d0bdddfc45f1636398b4747c03d2f222 *html/sum-GInteractions-method.html
2db22a7c7f9964d7bcacb0d567ae5773 *html/summariseByFeaturePairs.html
ef5115146782437742f056ad08d78fb3 *html/summariseByFeatures.html
e6dca7dec7d285f17ec7d2b45692a508 *html/thymus_enh.html
47536df9898136952caaaade22edc4e3 *html/updateObject-GenomicInteractions-method.html
aa104717f120f99c13e52c833f935b3b *html/viewPoint.html
