as.list,TxDb-method	TxDb-class
asBED,TxDb-method	as-format-methods
asGFF,TxDb-method	as-format-methods
browseUCSCtrack	makeTxDbFromUCSC
cds	transcripts
cds,TxDb-method	transcripts
cdsBy	transcriptsBy
cdsBy,TxDb-method	transcriptsBy
cdsByOverlaps	transcriptsByOverlaps
cdsByOverlaps,TxDb-method	transcriptsByOverlaps
class:FeatureDb	FeatureDb-class
class:TxDb	TxDb-class
columns,TxDb-method	select-methods
coordinate-mapping	coordinate-mapping-methods
coverageByTranscript	coverageByTranscript
disjointExons	disjointExons
disjointExons,TxDb-method	disjointExons
distance,GenomicRanges,TxDb-method	nearest-methods
exonicParts	exonicParts
exons	transcripts
exons,TxDb-method	transcripts
exonsBy	transcriptsBy
exonsBy,TxDb-method	transcriptsBy
exonsByOverlaps	transcriptsByOverlaps
exonsByOverlaps,TxDb-method	transcriptsByOverlaps
extractTranscriptSeqs	extractTranscriptSeqs
extractTranscriptSeqs,ANY-method	extractTranscriptSeqs
extractTranscriptSeqs,DNAString-method	extractTranscriptSeqs
extractUpstreamSeqs	extractUpstreamSeqs
extractUpstreamSeqs,GenomicRanges-method	extractUpstreamSeqs
extractUpstreamSeqs,GRangesList-method	extractUpstreamSeqs
extractUpstreamSeqs,TxDb-method	extractUpstreamSeqs
FeatureDb	FeatureDb-class
FeatureDb-class	FeatureDb-class
features	features
features,FeatureDb-method	features
fiveUTRsByTranscript	transcriptsBy
fiveUTRsByTranscript,TxDb-method	transcriptsBy
genes	transcripts
genes,TxDb-method	transcripts
getChromInfoFromBiomart	makeTxDbFromBiomart
getPromoterSeq	getPromoterSeq-methods
getPromoterSeq,GRanges-method	getPromoterSeq-methods
getPromoterSeq,GRangesList-method	getPromoterSeq-methods
id2name	id2name
intronicParts	exonicParts
intronsByTranscript	transcriptsBy
intronsByTranscript,TxDb-method	transcriptsBy
isActiveSeq	TxDb-class
isActiveSeq,TxDb-method	TxDb-class
isActiveSeq<-	TxDb-class
isActiveSeq<-,TxDb-method	TxDb-class
keys,TxDb-method	select-methods
keytypes,TxDb-method	select-methods
makeFDbPackageFromUCSC	makeTxDbPackage
makeFeatureDbFromUCSC	makeFeatureDbFromUCSC
makePackageName	makeTxDbPackage
makeTxDb	makeTxDb
makeTxDbFromBiomart	makeTxDbFromBiomart
makeTxDbFromEnsembl	makeTxDbFromEnsembl
makeTxDbFromGFF	makeTxDbFromGFF
makeTxDbFromGRanges	makeTxDbFromGRanges
makeTxDbFromUCSC	makeTxDbFromUCSC
makeTxDbPackage	makeTxDbPackage
makeTxDbPackageFromBiomart	makeTxDbPackage
makeTxDbPackageFromUCSC	makeTxDbPackage
mapFromTranscripts	coordinate-mapping-methods
mapFromTranscripts,GenomicRanges,GenomicRanges-method	coordinate-mapping-methods
mapFromTranscripts,GenomicRanges,GRangesList-method	coordinate-mapping-methods
mapIdsToRanges	mapIdsToRanges
mapIdsToRanges,TxDb-method	mapIdsToRanges
mapRangesToIds	mapRangesToIds
mapRangesToIds,TxDb-method	mapRangesToIds
mapToTranscripts	coordinate-mapping-methods
mapToTranscripts,ANY,TxDb-method	coordinate-mapping-methods
mapToTranscripts,GenomicRanges,GenomicRanges-method	coordinate-mapping-methods
mapToTranscripts,GenomicRanges,GRangesList-method	coordinate-mapping-methods
microRNAs	microRNAs
microRNAs,TxDb-method	microRNAs
nearest-methods	nearest-methods
organism,TxDb-method	TxDb-class
pcoverageByTranscript	coverageByTranscript
pmapFromTranscripts	coordinate-mapping-methods
pmapFromTranscripts,GenomicRanges,GenomicRanges-method	coordinate-mapping-methods
pmapFromTranscripts,GenomicRanges,GRangesList-method	coordinate-mapping-methods
pmapFromTranscripts,IntegerRanges,GenomicRanges-method	coordinate-mapping-methods
pmapFromTranscripts,IntegerRanges,GRangesList-method	coordinate-mapping-methods
pmapToTranscripts	coordinate-mapping-methods
pmapToTranscripts,GenomicRanges,GenomicRanges-method	coordinate-mapping-methods
pmapToTranscripts,GenomicRanges,GRangesList-method	coordinate-mapping-methods
pmapToTranscripts,GRangesList,GRangesList-method	coordinate-mapping-methods
promoters	transcripts
promoters,TxDb-method	transcripts
select,TxDb-method	select-methods
select-methods	select-methods
seqinfo,TxDb-method	TxDb-class
seqlevels0,TxDb-method	TxDb-class
seqlevels<-,TxDb-method	TxDb-class
show,TxDb-method	TxDb-class
species,TxDb-method	TxDb-class
supportedMiRBaseBuildValues	makeTxDbPackage
supportedUCSCFeatureDbTables	makeFeatureDbFromUCSC
supportedUCSCFeatureDbTracks	makeFeatureDbFromUCSC
supportedUCSCtables	makeTxDbFromUCSC
threeUTRsByTranscript	transcriptsBy
threeUTRsByTranscript,TxDb-method	transcriptsBy
tidyExons	exonicParts
tidyIntrons	exonicParts
tidyTranscripts	exonicParts
transcriptLengths	transcriptLengths
transcriptLocs2refLocs	transcriptLocs2refLocs
transcripts	transcripts
transcripts,TxDb-method	transcripts
transcriptsBy	transcriptsBy
transcriptsBy,TxDb-method	transcriptsBy
transcriptsByOverlaps	transcriptsByOverlaps
transcriptsByOverlaps,TxDb-method	transcriptsByOverlaps
transcriptWidths	transcriptLocs2refLocs
tRNAs	microRNAs
tRNAs,TxDb-method	microRNAs
TxDb	TxDb-class
TxDb-class	TxDb-class
UCSCFeatureDbTableSchema	makeFeatureDbFromUCSC
