fgseaRes {GeneTonic} | R Documentation

## A sample output from fgsea

### Description

A sample output object as created from a call to the `fgsea()` function, in the `fgsea` package, as a practical framework for performing GSEA

### Details

This object has been created on the data from the `macrophage` package by analyzing downstream the differentially expressed genes when comparing IFNg treated samples vs naive samples, accounting for the different cell lines included.

Details on how this object has been created are included in the `create_gt_data.R` script, included in the `scripts` folder of the `GeneTonic` package.

### References

Alasoo, et al. "Shared genetic effects on chromatin and gene expression indicate a role for enhancer priming in immune response", Nature Genetics, January 2018 doi: 10.1038/s41588-018-0046-7.

[Package GeneTonic version 1.2.0 Index]