.contingencyTable {GWENA} | R Documentation

## Calculate a contigency table of module overlap between datasets

### Description

Calculate a contigency table of module overlap between datasets

### Usage

    .contingencyTable(modAssignments, mods, tiNodelist)

### Arguments

`modAssignments` | a list where the first element is the 'moduleAssignments' vector in the discovery dataset, and the second element is the 'moduleAssignments vector in the test dataset.
`mods` | the 'modules' vector for the discovery dataset.
`tiNodelist` | a vector of node IDs in the test dataset.

### Value

A list containing a contigency table, a vector of the proportion of nodes present in the test dataset for each module, a vector containing the number of nodes present in the test dataset for each module, a vector of the node names present in both the discovery and test datasets, a vector of modules that are both requested and have nodes present in the test dataset, and the `modAssignments` vector containing only nodes present in the test dataset.

[Package GWENA version 1.0.1 Index]