# Tools for manipulating GO and microarrays

## Documentation for package ‘GOstats’ version 2.56.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

GOstats-package | Tools for manipulating GO and microarrays.
Bdists | Distance matrices for the BCR/ABL and NEG subgroups.
combGOGraph | Defunct Functions in GOstats Package
compCorrGraph | A function to compute a correlation based graph from Gene Expression Data
compGdist | A function to compute the distance between pairs of nodes in a graph.
conditional-method | Class "GOHyperGResult"
conditional-method | Class "OBOHyperGResult"
enumPairs | Triad Functions
expectedCounts-method | Class "GOHyperGResult"
expectedCounts-method | Class "OBOHyperGResult"
geneCounts-method | Class "GOHyperGResult"
geneCounts-method | Class "OBOHyperGResult"
geneIdUniverse-method | Class "GOHyperGResult"
geneIdUniverse-method | Class "OBOHyperGResult"
getGoGraph | Defunct Functions in GOstats Package
goDag | Class "GOHyperGResult"
goDag-method | Class "GOHyperGResult"
goDag-method | Class "OBOHyperGResult"
GOGraph | Construct the GO graph given a set of leaves.
GOHyperG | Defunct Functions in GOstats Package
GOHyperGResult-class | Class "GOHyperGResult"
GOKEGGHyperG | Defunct Functions in GOstats Package
GOLeaves | Defunct Functions in GOstats Package
GOstats | Tools for manipulating GO and microarrays.
GOstats-defunct | Defunct Functions in GOstats Package
htmlReport-method | Class "GOHyperGResult"
htmlReport-method | Class "OBOHyperGResult"
hyperG2Affy | Defunct Functions in GOstats Package
hyperGtable | Defunct Functions in GOstats Package
hyperGTest | Hypergeometric Tests for GO term association
hyperGTest-method | Hypergeometric Tests for GO term association
idx2dimnames | Index to Dimnames
inducedTermGraph | Extraction and Plotting of GO Terms from a GOHyperGResult Object
isTriad | Triad Functions
makeGOGraph | Construct a GO Graph
Ndists | Distance matrices for the BCR/ABL and NEG subgroups.
notConn | Find genes that are not connected to the others.
OBOHyperGResult-class | Class "OBOHyperGResult"
oddsRatios-method | Class "GOHyperGResult"
oddsRatios-method | Class "OBOHyperGResult"
oneGOGraph | Construct the GO graph given a set of leaves.
plotGOTermGraph | Extraction and Plotting of GO Terms from a GOHyperGResult Object
probeSetSummary | Summarize Probe Sets Associated with a hyperGTest Result
pvalues-method | Class "GOHyperGResult"
pvalues-method | Class "OBOHyperGResult"
reduce2Degreek | Triad Functions
selectedGenes | Defunct Functions in GOstats Package
shortestPath | Shortest Path Analysis
simLL | Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs.
simLP | Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs.
simUI | Functions to compute similarities between GO graphs and also between Entrez Gene IDs based on their induced GO graphs.
summary-method | Class "GOHyperGResult"
summary-method | Class "OBOHyperGResult"
termGraphs | Extraction and Plotting of GO Terms from a GOHyperGResult Object
triad | Triad Functions
triadCensus | Triad Functions