setEnrichmentFactors {GOSim} | R Documentation

## Set the depth and densitiy enrichment factors for GO term similarity.

### Description

Sets the depth and density enrichment factors for the enriched FuSSiMeg GO term similarity measure by Couto et al.

### Usage

    setEnrichmentFactors(alpha = 0.5, beta = 0.5)

### Arguments

`alpha` | depth factor
`beta` | density factor

### Value

none

### Note

The enrichment factors are stored internally and are used by the function `getTermSim`, if one uses the method "CoutoEnriched" to calculate GO term similarities

### Author(s)

Holger Froehlich

### References

F.Couto,M. Silva, P. Coutinho, Implementation of a Functional Semantic Similarity Measure between Gene-Products, DI/FCUL TR 03-29, Department of Informatics, University of Lisbon, 2003

### See Also

`getTermSim`

### Examples

    #\donttest{
     	setEnrichmentFactors(alpha=0.1,beta=0.5)
     	getTermSim(c("GO:0006955","GO:0007584"),method="CoutoEnriched")
    #}

[Package GOSim version 1.28.0 Index]