filterGO {GOSim} | R Documentation

## Filter GO.

### Description

Filter out genes from a list not mapping to the actual ontology. Genes not mapping to the currently set ontology ("BP","MF","CC") and not having one of the predefined evidence codes (default is to use all evidence codes) are removed.

### Usage

    filterGO(genelist)

### Arguments

`genelist` | character vector of Entrez gene IDs

### Value

List with items

`"genename"` | gene ID
`"annotation"` | character vector of GO terms mapping to the gene within the actual ontology

### Note

The result depends on the currently set ontology. IMPORTANT: The result refers to the GO library that was used to precompute the information contence of GO terms.

### Author(s)

Holger Froehlich

### See Also

`setOntology`, `setEvidenceLevel`, `getGOInfo`, `calcICs`

### Examples

    	filterGO(c("12345","4559"))

[Package GOSim version 1.28.0 Index]