0f13879758690de13e08cdbbb64322d7 *CITATION
ef4ba163894bd52762b0f99b828e3d96 *DESCRIPTION
757d3fc601278b9f0538f35b5eb1c5cc *INDEX
d9584faf742e4d0bb1e27349b19cf88e *Meta/Rd.rds
13817d04442e2d5ae30e6e96704f7ddd *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
5768f6d93dcbc782bee80fa12bc0cd55 *Meta/hsearch.rds
013cb7d1d978f7171bcc0af49506c6f6 *Meta/links.rds
99731aa2278741b4fc08633be0232af3 *Meta/nsInfo.rds
cec79d2a85e6fd4cd5e07578f62a6d46 *Meta/package.rds
3236d87fea9b975f6bd05a6aa82f0921 *Meta/vignette.rds
a2877147c439639af81b84f47783bd6a *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/FourCSeq
c20ad98c4cda50a1a9c9809e6ce9d9ca *R/FourCSeq.rdb
3af1ff11bb29052d0e785d8ccbeccca2 *R/FourCSeq.rdx
e712884310e3ae0225ae27d9b4125f3d *data/datalist
0789fe12ab99c865a0bbfad6109dd70a *data/fc.rda
16ca8c7048b6cc6872ef0b622068a9bc *data/fcf.rda
46741e4e6b3572937bfe4e70399650fa *doc/FourCSeq.R
d283e07caec6ca5a8ffaa0d09cb8fd77 *doc/FourCSeq.Rnw
5743d3803a363cdc86c3c11e80ebdff5 *doc/FourCSeq.pdf
988ed573102103c3c8a6351953ffddaa *doc/index.html
a47189afb85d952ce3f8c9029c5426ae *extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam
e66069ad85339fc6d53c82fd15331b9e *extdata/bam/CRM_ap_ApME680_MESO_6-8h_1_testdata.bam.bai
71abbf35f0027ba4136a183be67105b3 *extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam
b9ae7b5dd37a082cde997aeeecd30b8a *extdata/bam/CRM_ap_ApME680_MESO_6-8h_2_testdata.bam.bai
9995280b16d4dd17a2f6d469969d70bb *extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam
0cc7e25225dcdea740c8eb34c00cdaee *extdata/bam/CRM_ap_ApME680_WE_3-4h_1_testdata.bam.bai
fbe26ce19c28dabbf2e4091a1badd2d4 *extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam
0d76977b2e36046cc176112776c5fa4e *extdata/bam/CRM_ap_ApME680_WE_3-4h_2_testdata.bam.bai
d7271804926af64db2e5967c5dcd973b *extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam
89cda3597b0911a9021eb51a8d5a5620 *extdata/bam/CRM_ap_ApME680_WE_6-8h_1_testdata.bam.bai
26631755da6e4834f94337426858e559 *extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam
36692e73c13be4c94e3c355b9a1a697b *extdata/bam/CRM_ap_ApME680_WE_6-8h_2_testdata.bam.bai
255a24367518eb0f66ac409b42de54f3 *extdata/dm3_chr2L_1-6900.fa
22c667eddcaa6a93ba036d92d619b3d9 *extdata/primer.fa
52cdc74e647c9f0cd992a5b5c8e56263 *extdata/python/demultiplex.py
d3bca03dda0cf76445b40efb8a81d07f *help/AnIndex
2998c11df5d539e93e736e977ec206c6 *help/FourCSeq.rdb
207afcd0883db0a34a6e2a3cb18474f7 *help/FourCSeq.rdx
e82a7860e15aefaefa4e67d7d610bfbd *help/aliases.rds
34bcaed129504b6f5675a2c6c3543ce1 *help/paths.rds
824b849083e42ee5ef052ce3124649b1 *html/00Index.html
21b63b875b9c371333a83d95d24e2586 *html/FourC.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
747c648394280b4e455262250a54802d *html/addFragments.html
6fee2fea9df5fdcd069dd7e52d142f63 *html/addPeaks.html
9b94ec7c2956641bdb01d948bf4edf48 *html/addViewpointFrags.html
925ca9040de6cdc790c8147cbee54628 *html/combineFragEnds.html
631a985d7e9cb2dc3e8f126063d116b0 *html/countFragmentOverlaps.html
a9c10c7826e138b784349f60b2c96356 *html/countFragmentOverlapsSecondCutter.html
d8bd194572ae6c61c7fe26872b348f66 *html/distFitMonotone.html
001a80d4beb655cfbbba65b0b290e573 *html/distFitMonotoneSymmetric.html
5746c345ec55820fb7672dce9393adb5 *html/fc.html
e86922f64f1981cacc97ccd448aa3226 *html/fcf.html
669310848e24b9111788bad6a5d299c8 *html/findViewpointFragments.html
65cb549fca273477c38b6e289e76e006 *html/getAllResults.html
2161eef9bf444e237d34250658d1079a *html/getDifferences.html
e0067168dcc718f5ee717ade5f4e4926 *html/getDistAroundVp.html
5114066b7cbb666719d35a6b17c42619 *html/getNormalizationFactors.html
19cd7b4e66d319b9a6d6bfefed4f51e8 *html/getReferenceSeq.html
49283594c191d09620a3e239b3624441 *html/getZScores.html
7590da3c50c312b2ef7cea7f472d4374 *html/normalizeRPM.html
96f3849a953d5e71cb4662cba0eafeeb *html/plotDifferences.html
04211cba86890cfed319987def125156 *html/plotFits.html
a2e345638299d9bdff8a6b32e9f2fa4a *html/plotNormalizationFactors.html
fc3a2bc3551afa03c1195eaf375d5458 *html/plotScatter.html
9b51ccae1d6d56dc8040d2a7b707312e *html/plotZScores.html
60397193bfc7e7a166e8119ecac278ba *html/smoothCounts.html
530a7f8e5ea33f031baa4bc6257289f8 *html/smoothHitPerCent.html
8644155e913e203686b1dbe533308353 *html/writeTrackFiles.html
