c3889297e0b35684085654cc64b2a9e9 *DESCRIPTION
9edecc22e8a58a99e24ef228c8c0e5c1 *INDEX
8864fda5890a42cd4f8a5abd55b645bd *Meta/Rd.rds
e00065855163c282e8adab2a116bf019 *Meta/features.rds
c14a95abfb494ba7f4e39039e30ad99b *Meta/hsearch.rds
97947e27c88e6baf4f536ad1ed0c9868 *Meta/links.rds
fad74f1160e305e2955bf839f1072234 *Meta/nsInfo.rds
4ac217ac0e8fd8d97cef886893600c91 *Meta/package.rds
a82f08ea64d55365d918d4bc4108b838 *Meta/vignette.rds
94aae69bff0e78031fe9d832370fbaf4 *NAMESPACE
6e87938fd077ec5c682f85cf5510b5f3 *NEWS
ebf0fc819595d631b8bf280c4b049940 *R/FindMyFriends
242385f012b8ffc75e464a60f7c5e7f6 *R/FindMyFriends.rdb
c911dba9dc66bee157b85cb7a36067c3 *R/FindMyFriends.rdx
4f309ceb4c768ebfa3c59894231e791b *doc/FindMyFriends_intro.R
f81e3e59a6933dd142a3816763cef4dd *doc/FindMyFriends_intro.Rmd
ac3211c6c0af88a41258442492b3d248 *doc/FindMyFriends_intro.html
8d19751bcdc17fdbdbff53bcf1ee2e60 *doc/index.html
fa46e1011a04ec09310d7e0e02add746 *extdata/Mycoplasma.zip
1e5bee3f07405b335c2b85b200524867 *extdata/examplePG/example.annot
915ea4715c2f07af1daa3f0299dbb858 *extdata/examplePG/groupsNS.txt
4ab5ee4efeaade14d15df92b1eb04020 *extdata/examplePG/groupsWG.txt
6b8fa4249be53ba59699e82260b97d61 *extdata/examplePG/paraNS.txt
b9fb498e4ff448e0d2f9b3ce9a4df4f2 *extdata/examplePG/paraWG.txt
4d3d4c9cb4a952dc86ef25e5c5189ce4 *help/AnIndex
0643c10fed3427f70b534470b028e819 *help/FindMyFriends.rdb
176a424e022dbe49a9d8a0703e8b9f7a *help/FindMyFriends.rdx
4af4724937bcb6b59f5e4a7d6264c9c0 *help/aliases.rds
f52d55026b7e460d7099a43d1c25ca99 *help/paths.rds
66ad903fcf96d5491e5c3f6e3155e808 *html/00Index.html
32cf88e134e6a9e3e8537d9777f1ffcd *html/FindMyFriends-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
13ff3529b65edc4c14e6e0ec0ebb25dc *html/addGenomes.html
ec5d527cc25a929d97d164b0a2ac6107 *html/addGroupInfo.html
7d395040d3607df5e636de92432ec18d *html/addOrgInfo.html
283c5a786034c3577890fbed26153ec0 *html/cdhitGrouping.html
67bd8919d3e9460cc912315405db84d4 *html/collapseParalogues.html
ddd8f2bd514100ddb7839141304bd1b9 *html/defaults.html
668c6eacd8233690e3c86fb95513a5fa *html/fillDefaults.html
5d3717bf3ba54d98b2ad642c324ceae1 *html/geneLocation.html
d2e5fce7bcf78356b7122ab92ad800fa *html/geneNames.html
c70191086529cc1bde2392fe21c3addc *html/geneWidth.html
f46dd1d6d60a6a988e16fe0fc503ee12 *html/genes.html
afe1ecfe463697f92644d449eddcb4fa *html/getNeighborhood.html
cf48a4bfc93bfeb7e33729c77ab8bd84 *html/getRep.html
a42f22c8e7662f2da53617319338e6dc *html/gpcGrouping.html
b20adb1e6d07bd53ca57c6fe54c0f9f3 *html/graphGrouping.html
3cf224d626bbead1481b6056490d403d *html/groupInfo.html
994d2535491b6de6022fc8fdf7d700f2 *html/groupNames.html
7e7aee6276ebdd3434a0ae0e460cbcc4 *html/groupStat.html
56bb01da02a31278cc7c66c698a3edc1 *html/hasGeneGroups.html
096780e43b9f319c08a89e993c188e47 *html/hasGeneInfo.html
8fd6732aab8a4e047182b436431a0142 *html/hasParalogueLinks.html
2ae89334d711e5c5f638836758d6dc8f *html/internalGroupGenes.html
43893f390312e018aac3fcfb2614689c *html/internalMergePangenomes.html
0534540a58ea59bc59a319028177b322 *html/internalMetadata.html
42054fbe2e5d8a1adf523fa63ef98dff *html/kmerLink.html
20345e1a8cd3a3284c8b2f790daacf51 *html/kmerSimilarity.html
459998beb2f765b7841827271aa88d74 *html/kmerSplit.html
76f39279d57717aafb8a3f0d71d69037 *html/loadPgExample.html
295850f385a1085535806940e61b3270 *html/manualGrouping.html
06f820dc41db246d5f8dea50047baee4 *html/nGeneGroups.html
8142fe47195796c3e687375f91fa7524 *html/nGenes.html
e7144d8c928261fe349acc62478251f3 *html/nOrganisms.html
0a37ff6f8b39034b1466ee88dc0eaf57 *html/neighborhoodSplit.html
b719b6841e5b82b69b8877a0cea23b0a *html/orgInfo.html
5fccc30cfe0b18677866829163e5e230 *html/orgNames.html
a17088e7295222414b57c7c61948ca4b *html/orgStat.html
a13fa7e8e1e31e455efb00e77bc60e83 *html/pangenome.html
40812f1c1b991d3a5b87a0fa2bf75a2b *html/pcGraph.html
1cbb9209c9c12fdf38d84651304a4585 *html/pgFull-class.html
91153c2a4abd93e25d7c89334035efd9 *html/pgFullLoc-class.html
aed3cce525231fd4c077dc40d7557307 *html/pgInMem-class.html
edc7a314e3eff2ed76942d58b264e3c5 *html/pgInMemLoc-class.html
345613e37c3d97af2baaa67d86e343d9 *html/pgLM-class.html
5f698a0b1411420e6bbbf58b91e0b03f *html/pgLMLoc-class.html
37e841d23b3e044db7454de963e79228 *html/pgMatrix.html
609a3d63bbab41d3a5b16099a361d3f2 *html/pgSlim-class.html
7a46797eaab9f350c1fd364970f52cd6 *html/pgSlimLoc-class.html
f9f4376608767e90ca4ccda7c43ac4cc *html/pgVirtual-class.html
4ca1666e965758285b6a758c9d46b5b1 *html/pgVirtualLoc-class.html
4e82aa21b037e72afc3c7791785a45f6 *html/plotEvolution.html
42e62c65e7189fd0775bd0245a66b226 *html/plotGroup.html
a18b696bb7c2ce7e65af8f438352ce70 *html/plotNeighborhood.html
835c2f98fce4f050d21838e9379e5c2c *html/plotSimilarity.html
bee1788c8d6df24707c34932aeb9bcdb *html/plotStat.html
4bf9e2e29db49c0f74c33f4fd695f647 *html/plotTree.html
bc7882bf8d1f8d1e4ad9c8f74acb65c9 *html/readAnnot.html
5696c2a8f8f5f45115f2c637286b48b9 *html/removeGene.html
1427e092a05b98988893fd08ca09b9f9 *html/reportGroupChanges.html
fd3ed9c9c271d7db8ecdb66c29731d34 *html/seqToGeneGroup.html
041f81b9541982033c1c50c3cec66a95 *html/seqToOrg.html
aafb2cb8ac5428005685264f91d4a32d *html/translated.html
3fb38069e0d7e7750e77de119595205d *html/variableRegions.html
8f05f3253a4ca0b8d0669debec5e2da9 *libs/i386/FindMyFriends.dll
06cad5395c68ec4c656adfcbe040c9a4 *libs/x64/FindMyFriends.dll
