Package: EGSEA
Title: Ensemble of Gene Set Enrichment Analyses
Version: 1.18.1
Date: 24-08-2017
Author: Monther Alhamdoosh, Luyi Tian, Milica Ng and Matthew Ritchie
Maintainer: Monther Alhamdoosh <m.hamdoosh@gmail.com>
Description: This package implements the Ensemble of Gene Set Enrichment
    Analyses (EGSEA) method for gene set testing.
biocViews: ImmunoOncology, DifferentialExpression, GO, GeneExpression,
        GeneSetEnrichment, Genetics, Microarray, MultipleComparison,
        OneChannel, Pathways, RNASeq, Sequencing, Software,
        SystemsBiology, TwoChannel,Metabolomics, Proteomics, KEGG,
        GraphAndNetwork, GeneSignaling, GeneTarget, NetworkEnrichment,
        Network, Classification
Depends: R (>= 3.5), Biobase, gage (>= 2.14.4), AnnotationDbi, topGO
        (>= 2.16.0), pathview (>= 1.4.2)
Imports: PADOG (>= 1.6.0), GSVA (>= 1.12.0), globaltest (>= 5.18.0),
        limma (>= 3.20.9), edgeR (>= 3.6.8), HTMLUtils (>= 0.1.5),
        hwriter (>= 1.2.2), gplots (>= 2.14.2), ggplot2 (>= 1.0.0),
        safe (>= 3.4.0), stringi (>= 0.5.0), parallel, stats, metap,
        grDevices, graphics, utils, org.Hs.eg.db, org.Mm.eg.db,
        org.Rn.eg.db, RColorBrewer, methods, EGSEAdata (>= 1.3.1),
        Glimma (>= 1.4.0), htmlwidgets, plotly, DT
License: GPL-3
LazyLoad: yes
NeedsCompilation: no
Suggests: BiocStyle, knitr, testthat
VignetteBuilder: knitr
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/EGSEA
git_branch: RELEASE_3_12
git_last_commit: f1be510
git_last_commit_date: 2021-01-27
Date/Publication: 2021-01-28
Packaged: 2021-01-29 02:01:50 UTC; biocbuild
Built: R 4.0.3; ; 2021-01-29 14:24:22 UTC; windows
