build_coexp_GEOID {EGAD} | R Documentation

## Builds a coexpression network given a GEO ID

### Description

The function generates a dense coexpression network from expression data stored in GEO. The expression data is downloaded from GEO. Correlation coefficicents are used as to weight the edges of the nodes (genes). Calls `get_expression_matrix_from_GEO` and `build_coexp_network`.

### Usage

    build_coexp_GEOID(gseid, gene.list, method = "spearman", flag = "rank")

### Arguments

`gseid` | string GEO ID of expression experiment
`gene.list` | array of gene labels
`method` | correlation method to use, default Spearman's rho
`flag` | string to indicate if the network should be ranked

### Value

net Matrix symmetric

[Package EGAD version 1.18.0 Index]