volcanoPlot {Doscheda} | R Documentation

## Volcano plot for objects of class ChemoProtSet

### Description

Volcano plots designed to be run on objects of class 'ChemoProtSet' when a linear model has been applied.

### Usage

    volcanoPlot(x, coefficient = "slope", avExprs = 0.2, pVal = 0.05, ...)

    ## S4 method for signature 'ChemoProtSet'
    volcanoPlot(x, coefficient = "slope",
      avExprs = 0.2, pVal = 0.05, ...)

### Arguments

`x` | object of class 'ChemoProtSet'
`coefficient` | coefficient of linear model to be plotted ('slope','intercept','quadratic')
`avExprs` | average expression cutoff
`pVal` | p-value cut-off
`...` | other plotting options

### Value

volcano plot for objects of class ChemoProtSet

### See Also

`DoschedaSet`

### Examples

    ex <- processedExample
    ex <- runNormalisation(ex)
    ex <- fitModel(ex)
    volcanoPlot(ex)

[Package Doscheda version 1.12.0 Index]