391f8a3899bc796bbed73c5b3212a2d8 *CITATION
03f8a9c9757a0c9cdffddae939e1b2d8 *DESCRIPTION
ae644fcd49997d3efa297b417ab4100f *INDEX
c357d481c9ac5daa7334b371073c6044 *Meta/Rd.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
f5743eba54b38ce45ed84bc9fbf14f48 *Meta/hsearch.rds
f6ccb864852b570cfb80beb200915dbf *Meta/links.rds
9f01ca0a2022a1aacd9e168ed0e8c21e *Meta/nsInfo.rds
8150094d70d2cba457ea3042958b253d *Meta/package.rds
2fd0d93017af255fabd41eca22354e17 *Meta/vignette.rds
cd06ca101906c87168e789504fdd80f3 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/DiffLogo
649fb6ba877fce95a6b00624482c7f9b *R/DiffLogo.rdb
3072a99635380d993b2a11d05f3aa60b *R/DiffLogo.rdx
e27c8b408c4ec4b44194743158c837c0 *doc/DiffLogoBasics.R
68c883ea98ff6663d211382a28a0038c *doc/DiffLogoBasics.Rnw
a8c15892f8d2a7590da760719a1a3e96 *doc/DiffLogoBasics.pdf
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9e64524098dcc3547b0a5033d37a3984 *extdata/alignments/F-box_bacteria.seq.fa
b638c19a42f513e456205f9f25794d2f *extdata/alignments/F-box_fungi.seq.fa
9c3c87fdf80fefc6cf3d20485aa94743 *extdata/alignments/F-box_metazoa.seq.fa
81c829501e6d19ac9ebe29dc3eecf303 *extdata/alignments/F-box_viridiplantae.seq.fa
45eea31652c9bf73aff2c145ab10ce97 *extdata/alignments/Mad.txt
707dbdd70ccc0cc51590f505e03f6a70 *extdata/alignments/Max.txt
b411ab2abc76e3437ccd6e818df31d54 *extdata/alignments/Myc.txt
d6422185297c2583f4419f467aec0574 *extdata/alignments/calamodulin_1.txt
4d0f44df6595197edd2b21d3549b4e57 *extdata/alignments/calamodulin_2.txt
2cec07f111c114b62e74dc5fda6d5b17 *extdata/alignments/phosphorylation_1.txt
610cceb5049e7cca41221bce75f23d95 *extdata/alignments/phosphorylation_2.txt
c78d0348b409bfaf488df306859666da *extdata/alignments/ubiquitination_1.txt
cdce4193c5fadfe94bc64bd20fd082b5 *extdata/alignments/ubiquitination_2.txt
8c38fdb2ea172dabd1ab4c45ddf5a4cb *extdata/homer/CTCF_SatelliteElement_Zf_CD4.motif
774f4bdd1a44d8c272a63396d7e9456c *extdata/homer/CTCF_Zf_CD4.motif
eaaac1b0e8624dce03d814d29ab7a8ac *extdata/homer/Max.motif
fd5d4c365e7e5de7f31f2adcc8df2a53 *extdata/homer/c-Myc.motif
ccc5a3fef2d1a0e70be046cce43dc22e *extdata/pfm/ctcf_jaspar.pfm
6093b56d5f72163054afddfa7e1013e3 *extdata/pwm/GM12878.pwm
ac0ed6904d023f00b38f953060434399 *extdata/pwm/H1-hESC.pwm
5c049781855e3d08d476eb735e438438 *extdata/pwm/HUVEC.pwm
56e78321b415f4e5f39cb226ddb3915c *extdata/pwm/HeLa-S3.pwm
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a55a478ca869b172f945c7e004de9aba *extdata/pwm/K562.pwm
7256e36aa113e2ef2f25345cdf816682 *extdata/pwm/MCF7.pwm
d7bade5c657d185fc7c4b7e15199183b *extdata/pwm/NHEK.pwm
1e417b7456962e38375fdb5de6c67bb4 *extdata/pwm/ProgFib.pwm
d1d4f1b8a6f4aa46a8181c7d85f2d199 *help/AnIndex
00da3220699635fabbd1228602342f0a *help/DiffLogo.rdb
dbab28401b1a5cde3a0db4d9258d3007 *help/DiffLogo.rdx
7c3b7a58d88e8cf2b1041856d060e478 *help/aliases.rds
44b3324a544ae30871c814c1dc8a5c42 *help/paths.rds
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4a01b169ed2c730f3fcfaf7dedda447f *html/ASN.html
225e3965e5cba698f3fc8069064c5760 *html/Alphabet.html
0c7cd2a0b72baa421ea0326b6b1caeec *html/DNA.html
8301e20f4ef9313fab3f2355d89e15f1 *html/FULL_ALPHABET.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
70cee8a0b305fb1675da8267007e13fd *html/RNA.html
9195f59d67970022fa03191ebdb29165 *html/alignPwmSets.html
cc7a1da1ceed1826f70b0977a9caec18 *html/baseDistributionPwm.html
1eadeeabb3ea0640cb6b4545cd156504 *html/calculatePvalue.html
8a6816d360d314cb1f098a1a9325445b *html/createDiffLogoObject.html
2e64123a1a764012a14de7d88b5377e1 *html/diffLogo.html
fb2c2e1472209c9e10dc4b503c979df2 *html/diffLogoFromPwm.html
e75c61a6f0c883bbcb9aa4d573606887 *html/diffLogoTable.html
7a454db583312cd835f4dd19e0208ddc *html/diffLogoTableConfiguration.html
6a30519c854e0db6fb9aabf9357d053b *html/differenceOfICs.html
9b891eeda20ff345cf16a3627c2b5410 *html/drawDiffLogoTable.html
0c34f3ad2e7963483e2bdbb70b5a378c *html/enrichDiffLogoObjectWithPvalues.html
272ca9465779f7eb23752a8e526b539c *html/enrichDiffLogoTableWithPvalues.html
73f8802436eab7a61c47a6248786d3a5 *html/extendPwmsFromAlignmentVector.html
abd5b3ca179e19486b6cb028def97eff *html/getAlphabetFromCharacters.html
bfacd9b317d4554321e6dfa4492ff697 *html/getAlphabetFromSequences.html
0e39353d38b81762e1cb7af46f674e88 *html/getPwmFromAlignment.html
ccc0a60b344348a1e85a076ccee4334d *html/getPwmFromAlignmentFile.html
0d37f6ed8b926c048c950571766a3c8d *html/getPwmFromFastaFile.html
cdbb64f29c6685c2b62f8a691dcbb7e4 *html/getPwmFromFile.html
e3d93bfc507dbc4570738575029d6600 *html/getPwmFromHomerFile.html
1a4ae2b49d42936103c1ac4e1e9c8716 *html/getPwmFromPfmOrJasparFile.html
0b8eb17df508455079e645416b665d4e *html/getPwmFromPwmFile.html
085fbd3ab5514b65e5a6103faed1b712 *html/getSequencesFromAlignmentFile.html
fdfd66f52d424f2f40a2433f13964148 *html/getSequencesFromFastaFile.html
f8f62d551ec495df07c0a973fa5172b7 *html/informationContent.html
1de299427676f15815edc0044779fdaf *html/localPwmAlignment.html
89b99272d3cefd12de2d4de8adfba5e2 *html/lossOfAbsICDifferences.html
10d38b278f093d3511e0f49d20395af9 *html/multipleLocalPwmsAlignment.html
d07ef2722f7c7f758b5d3ad5d05fc1a6 *html/normalizePWM.html
547d792660e394e11c94c5d206ab3428 *html/normalizedDifferenceOfProbabilities.html
ad9dfb2b887a81795942fe42a66be5a2 *html/prepareDiffLogoTable.html
28dbad742255c21c07a504edc20993f7 *html/probabilities.html
a4a1300aad8aea1069c2b2876639a095 *html/pwmDivergence.html
9e497bb261ce72b4d2de56a5f7fea2bd *html/pwmsDistanceMatrix.html
17779b0c542ba2798255e940cb6f87d1 *html/reverseAlignmentVector.html
44fc667d88480ce234e2a6b835a71935 *html/seqLogo.html
b02ba0b24fed54f59b21675e7533823d *html/shannonDivergence.html
89a27928ccb07c24d31537610fa2e4d3 *html/sumOfAbsICDifferences.html
6b013e42ef33b2f9477c65b806a72c07 *html/sumOfAbsProbabilityDifferences.html
6ef0458ba53fcc5b08f55b95b37bb036 *html/sumProbabilities.html
bffd0051b7ac51f132cccc6ab3f1579d *html/switchDirection.html
96e01caadfb9fe8dbf6a9b6f58d462b2 *html/twoSetsAveragePwmDivergenceFromAlignmentVector.html
