Package: DMCHMM
Type: Package
Title: Differentially Methylated CpG using Hidden Markov Model
Version: 1.12.0
Authors@R: c(person("Farhad", "Shokoohi", role = c("aut", "cre"),
                     email = "shokoohi@icloud.com", comment = c(ORCID = "0000-0002-6224-2609"))
              )
Description: A pipeline for identifying differentially methylated CpG sites 
    using Hidden Markov Model in bisulfite sequencing data.
Depends: R (>= 4.0.0), SummarizedExperiment, methods, S4Vectors,
        BiocParallel, GenomicRanges, IRanges, fdrtool
Imports: utils, stats, grDevices, rtracklayer, multcomp, calibrate,
        graphics
Suggests: testthat, knitr
VignetteBuilder: knitr
biocViews: DifferentialMethylation, Sequencing, HiddenMarkovModel,
        Coverage
License: GPL-3
Date: 2020-09-27
Encoding: UTF-8
LazyData: true
BugReports: https://github.com/shokoohi/DMCHMM/issues
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2020-10-28 01:25:10 UTC; biocbuild
git_url: https://git.bioconductor.org/packages/DMCHMM
git_branch: RELEASE_3_12
git_last_commit: c44e65d
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
Author: Farhad Shokoohi [aut, cre] (<https://orcid.org/0000-0002-6224-2609>)
Maintainer: Farhad Shokoohi <shokoohi@icloud.com>
Built: R 4.0.3; ; 2020-10-28 14:04:31 UTC; windows
