combine-method {DMCFB} | R Documentation

## combine method

### Description

combine two `BSDMC-class` or two `BSDMC-class`

### Usage

    combine(obj1, obj2)

    ## S4 method for signature 'BSDMC,BSDMC'
    combine(obj1, obj2)

### Arguments

`obj1` | A `BSDMC-class`
`obj2` | A `BSDMC-class`

### Value

A `BSDMC-class` or `BSDMC-class`

### Author(s)

Farhad Shokoohi <shokoohi@icloud.com>

### Examples

    set.seed(1980)
    nr <- 150
    nc <- 8
    metht <- matrix(as.integer(runif(nr * nc * 2, 0, nr)), nr)
    methc <- matrix(
      rbinom(n = nr * nc, c(metht), prob = runif(nr * nc * 2)),
      nr, nc * 2
    )
    methl <- methc / metht
    r1 <- GRanges(rep("chr1", nr), IRanges(1:nr, width = 1), strand = "*")
    names(r1) <- 1:nr
    cd1 <- DataFrame(Group = rep("G1", each = nc), row.names = LETTERS[1:nc])
    OBJ1 <- cBSDMC(
      rowRanges = r1, methReads = methc[, 1:nc], totalReads = metht[, 1:nc],
      methLevels = methl[, 1:nc], colData = cd1
    )
    cd2 <- DataFrame(
      Group = rep("G2", each = nc),
      row.names = LETTERS[nc + 1:nc]
    )
    OBJ2 <- cBSDMC(
      rowRanges = r1, methReads = methc[, nc + 1:nc], totalReads =
        metht[, nc + 1:nc], methLevels = methl[, nc + 1:nc], colData = cd2
    )
    OBJ3 <- combine(OBJ1, OBJ2)
    OBJ3

[Package DMCFB version 1.4.0 Index]