DEGreport-package {DEGreport} | R Documentation

## Deprecated functions in package DEGreport

### Description

These functions are provided for compatibility with older versions of DEGreport only and will be defunct at the next release.

### Details

The following functions are deprecated and will be made defunct; use the replacement indicated below:

- degRank, degPR, degBIcmd, degBI, degFC, degComb, degNcomb: DESeq2::lcfShrink. This function was trying to avoid big FoldChange in variable genes. There are other methods nowadays like lcfShrink function. DEGreport

### Author(s)

Maintainer: Lorena Pantano lorena.pantano@gmail.com

Other contributors:

- John Hutchinson @jnhutchinson [contributor]

- Victor Barrera @vbarrera [contributor]

- Mary Piper @marypiper [contributor]

- Radhika Khetani @rkhetani [contributor]

- Kenneth Daily [contributor]

- Thanneer Malai Perumal [contributor]

- Rory Kirchner @roryk [contributor]

- Michael Steinbaugh @mjsteinbaugh [contributor]

### See Also

Useful links:

- http://lpantano.github.io/DEGreport/

- Report bugs at https://github.com/lpantano/DEGreport/issues

[Package DEGreport version 1.26.0 Index]