binding.site.list {DBChIP} | R Documentation

## Binding site predictions

### Description

Binding site predictions for emb and L1 conditions in a study of transcription factor PHA-4/FOXA in C.elegans

### Usage

    data("PHA4")

### Format

List of 2 elements: emb and L1. Each element is a data.frame with fields: chr, strand and weight (optional).

### Details

Weight represents a measure of strength of the binding, for example, the number of reads in the peak.

### Source

Zhong et al. (2010), Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response, PLoS Genetics, 6, e1000848.

### See Also

`PHA4`

### Examples

    data(PHA4)
    names(binding.site.list)
    head(binding.site.list[["emb"]])

[Package DBChIP version 1.34.0 Index]