hc_logFC_DensityPlot {DAPAR} | R Documentation

## Density plots of logFC values

### Description

This function show the density plots of Fold Change (the same as calculated by limma) for a list of the comparisons of conditions in a differnetial analysis.

### Usage

    hc_logFC_DensityPlot(df_logFC, threshold_LogFC = 0, palette = NULL)

### Arguments

`df_logFC` | A dataframe that contains the logFC values
`threshold_LogFC` | The threshold on log(Fold Change) to distinguish between differential and non-differential data
`palette` | xxx

### Value

A highcharts density plot

### Author(s)

Samuel Wieczorek

### Examples

    utils::data(Exp1_R25_pept, package='DAPARdata')
    obj <- Exp1_R25_pept[1:1000]
    keepThat <- mvFilterGetIndices(obj, condition='WholeMatrix', threshold=ncol(obj))
    obj <- mvFilterFromIndices(obj, keepThat)
    qData <- Biobase::exprs(obj)
    sTab <- Biobase::pData(obj)
    res <- limmaCompleteTest(qData,sTab)
    hc_logFC_DensityPlot(res$logFC, threshold_LogFC=1)

[Package DAPAR version 1.22.9 Index]