wrapperCalibrationPlot {DAPAR} | R Documentation

## Performs a calibration plot on an `MSnSet` object, calling the `cp4p` package functions.

### Description

This function is a wrapper to the calibration.plot method of the `cp4p` package for use with `MSnSet` objects.

### Usage

    wrapperCalibrationPlot(vPVal, pi0Method = "pounds")

### Arguments

`vPVal` | A dataframe that contains quantitative data.
`pi0Method` | A vector of the conditions (one condition per sample).

### Value

A plot

### Author(s)

Samuel Wieczorek

### Examples

    utils::data(Exp1_R25_pept, package='DAPARdata')
    obj <- Exp1_R25_pept[1:1000]
    keepThat <- mvFilterGetIndices(obj, condition='WholeMatrix', threshold=ncol(obj))
    obj <- mvFilterFromIndices(obj, keepThat)
    qData <- Biobase::exprs(obj)
    sTab <- Biobase::pData(obj)
    limma <- limmaCompleteTest(qData,sTab)
    wrapperCalibrationPlot(limma$P_Value[,1])

[Package DAPAR version 1.22.9 Index]