heatmapD {DAPAR} | R Documentation

## This function is a wrapper to `heatmap.2` that displays quantitative data in the `exprs()` table of an object of class `MSnSet`

### Description

Heatmap of the quantitative proteomic data of a `MSnSet` object

### Usage

    heatmapD(
      qData,
      conds,
      distance = "euclidean",
      cluster = "complete",
      dendro = FALSE
    )

### Arguments

`qData` | A dataframe that contains quantitative data.
`conds` | A vector containing the conditions
`distance` | The distance used by the clustering algorithm to compute the dendrogram. See `help(heatmap.2)`
`cluster` | the clustering algorithm used to build the dendrogram. See `help(heatmap.2)`
`dendro` | A boolean to indicate fi the dendrogram has to be displayed

### Value

A heatmap

### Author(s)

Florence Combes, Samuel Wieczorek, Enor Fremy

### Examples

    ## Not run:
    utils::data(Exp1_R25_pept, package='DAPARdata')
    obj <- mvFilter(Exp1_R25_pept[1:1000], "WholeMatrix", 6)
    qData <- Biobase::exprs(obj)
    conds <- pData(obj)[['Condition']]
    heatmapD(qData, conds)

    ## End(Not run)

[Package DAPAR version 1.22.9 Index]