ea128487607470fcdb9813cf7b2ff2c1 *DESCRIPTION
04abe9acd244279b6c0e43be816f967f *INDEX
b832c0586ed82ea23d3e6e48a78b5682 *Meta/Rd.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
681811459c63be1aedd43858ab046b15 *Meta/hsearch.rds
99b44a15a0e1aa5962a5324356b853b9 *Meta/links.rds
184fddefad96b589ba8f6609398bc2cc *Meta/nsInfo.rds
4ace64925aac6da2391a1ba0b094e16d *Meta/package.rds
1056feb00f8f204e8f45b4dbc714438b *Meta/vignette.rds
729c50955a736ca2094cfdcab65e564b *NAMESPACE
d41d8cd98f00b204e9800998ecf8427e *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/CopyNumberPlots
92a509d1e224a192762321e46a27933e *R/CopyNumberPlots.rdb
f356f0f0d39e0ab90350d3ab158e2455 *R/CopyNumberPlots.rdx
a319d31378583f387ade3cacf9283e46 *doc/CopyNumberPlots.R
2ea09613c3512a9a27afcbf47cf6f8b6 *doc/CopyNumberPlots.Rmd
6429030c58720d0e26fb3c633f8a1156 *doc/CopyNumberPlots.html
7a9b1e5148a20b54afee01ead91772ae *doc/index.html
008d3351fb8c41e512fba63b74543b6d *extdata/CNVkit_output.cns
4136f91f446256a68f86b278edab7c6f *extdata/DECoN_output.txt
66c11b914cca097fab4022bc607133b5 *extdata/DNACopy_output.seg
9fc4fa5f4efc34e93e1a0a11c79099f8 *extdata/S1.rawdata.txt
fc90709b17e1210e4373edf2f0d4158d *extdata/S1.segments.txt
7147d6dc743cd42b66256bf8b1e4fce8 *extdata/S2.rawdata.txt
c712bb81fbac1d6b02135695a720369c *extdata/S2.segments.txt
5ffd79cbbcd65077001bff19b41992c8 *extdata/S3.rawdata.txt
d1a7ee3e9bc991c27b9fdc3fb56bde2a *extdata/S3.segments.txt
91efe67aa6d6d76729238e8c81ba5470 *extdata/SNP_example_data.csv
01f353d3efcb69fff9ab065d0ac38079 *extdata/cn.mops.segmentation.csv
5161203ed876bce6f1bc20c86a8cba6a *extdata/example.vcf.gz
644d3c7029cd7f5b79da1b9564a8e34d *extdata/example.vcf.gz.tbi
df5dc01ccd1592979225e3e2474c21ad *extdata/pennCNV.rawcnv
888d6b9933b6b99134e25ea40b80ac17 *extdata/snp.data_test.csv
8fbda5278bcab786685c0464c0f461e2 *extdata/snp.data_test2.csv
ee13d90cbb5c476ef154dc5b5faaa70c *help/AnIndex
d9ea15b993960bb23a964d939cb6eeb5 *help/CopyNumberPlots.rdb
d191eec4b11680e9829cfd5f07eb7e15 *help/CopyNumberPlots.rdx
0abeec85d248a938745c202551d86a1c *help/aliases.rds
e7899bfb3fc938e1c927938a7d861d4f *help/paths.rds
b42682757d028273389e2d6f0eab379a *html/00Index.html
55b7896018fe782eed452318f92b9d2d *html/EnsemblStyle.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
6c64e539b5f6b8b0641f1d6cc8de8af3 *html/UCSCStyle.html
4afbfdce77e49275ded4ce8c172adcc6 *html/Ztree2Hclust.html
6651a6f32edd70f073130cd3224375b7 *html/colByCopyNumber.html
6d1fdaf657bf8f8c807bd981295eeffb *html/computeHclustPlotOrder.html
19965fb167805fe4ab06a1d8ff2c4dcb *html/getBAFColumn.html
7196a1c00ba173cf9ca57b1506cf66c0 *html/getChrColumn.html
b85379849042e88798312864134d884a *html/getColumn.html
4f9fe87a73d36ca1164cf0c6576f5410 *html/getCopyNumberColors.html
7f9926f2403db98cbc228653160faf24 *html/getCopyNumberColumn.html
91b4c0791606d70ad364134a434fc2b8 *html/getEndColumn.html
ec343bcf7984a2f4cdbc65de6127af7d *html/getIDColumn.html
51816692e357f516a8028b2f46eda9f0 *html/getLOHColumn.html
4d2954689c7be4332eb27c22a095ad68 *html/getLRRColumn.html
3a6c9fe2066be4fd77ad0075b01525f6 *html/getPosColumn.html
076d26ba1ecf9554bc060cce26b24bb3 *html/getSegmentValueColumn.html
8206f81d21910cf14bc89bb4c2fadfcc *html/getStartColumn.html
ab272a95af08b606c4a75514f5bb733c *html/loadCopyNumberCalls.html
e50050dea69b487def2bc4f06db1a97e *html/loadCopyNumberCallsCNVkit.html
6ad51214fd54542869d239c46f2f4bdf *html/loadCopyNumberCallsCnmops.html
b0bd06358fcd140dc39a4d17cd51b1d3 *html/loadCopyNumberCallsDECoN.html
9093fd5fdc1140b7ce639b6bf6d00da3 *html/loadCopyNumberCallsDNAcopy.html
ff4ffb7879c9333be72fb9c745e8df91 *html/loadCopyNumberCallsPanelcnmops.html
192af07ea173fd97ad72f150c805ed62 *html/loadCopyNumberCallsSeg.html
0b661bc6ffebe2a06816c9c62f468b4a *html/loadCopyNumberCallspennCNV.html
9f0c90531542b2598cd14c80627a7f51 *html/loadSNPData.html
cbd5f7283a381e4127504073a2068355 *html/loadSNPDataDNAcopy.html
9e381e678430059d6b841efa60f31383 *html/loadSNPDataFromVCF.html
982e5b4ef78f344d67a67754554e5863 *html/plotBAF.html
1c2e8f59e3b79f4bcfee4bd3a295abdb *html/plotCopyNumberCalls.html
dfcabfb5dd99a45438d050bf4640f944 *html/plotCopyNumberCallsAsLines.html
b0b8afe3b20f41e729be908ecdcd6d0b *html/plotCopyNumberSummary.html
27622704c2d347b40c6da98a6dddaa37 *html/plotLRR.html
dda0f7c2a049e4aa75e62a7d4fe88185 *html/plotSingleCellCopyNumberCalls.html
e28593ccf4bcfa60a365239acf74f1b8 *html/plotSingleCellCopyNumberSummary.html
e725a307474143d183fd7e80cc833898 *html/prepareLabels.html
07377516532a2a51d2096fe77a6aa540 *html/readHDF5Ztree.html
ec644dd847b8ca640d289f283b946e26 *html/removeNAs.html
a64bad752b4c48128011e4a40fddd2ce *html/transformChr.html
