plotPatternMarkers {CoGAPS} | R Documentation

## heatmap of original data clustered by pattern markers statistic

### Description

heatmap of original data clustered by pattern markers statistic

### Usage

    plotPatternMarkers(
      object,
      data,
      patternPalette,
      sampleNames,
      samplePalette = NULL,
      heatmapCol = bluered,
      colDenogram = TRUE,
      scale = "row",
      ...
    )

### Arguments

`object` | an object of type CogapsResult
`data` | the original data as a matrix
`patternPalette` | a vector indicating what color should be used for each pattern
`sampleNames` | names of the samples to use for labeling
`samplePalette` | a vector indicating what color should be used for each sample
`heatmapCol` | pallelet giving color scheme for heatmap
`colDenogram` | logical indicating whether to display sample denogram
`scale` | character indicating if the values should be centered and scaled in either the row direction or the column direction, or none. The default is "row".
`...` | additional graphical parameters to be passed to `heatmap.2`

### Value

heatmap of the `data` values for the `patternMarkers`

### See Also

`heatmap.2`

[Package CoGAPS version 3.10.0 Index]