convert_Yeast_SGDId_2_systematic {ClusterJudge} | R Documentation

## converts the SGD Gene Id into the systematic name of the gene

### Description

converts the Saccharomyces Genome Database (SGD) Gene Id into the systematic name of the gene

### Usage

    convert_Yeast_SGDId_2_systematic(SGD.Ids = c("S000007287", "S000007287", "S000007287"))

### Arguments

`SGD.Ids` | a vector of characters. Each element is a string representing a gene.

### Value

a matrix of characters containing the input SGD gene Ids as first column and the corresponding Yeast systematic gene names as seccond column.

### Note

it requires online access to http://llama.mshri.on.ca/cgi/synergizer/serv where the conversion is performed.

It uses the httr and jsonlite R packages.

### Author(s)

Adrian Pasculescu

### References

Yeast - Systematic Names Assignment in http://www.yeastgenome.org/help/community

GF Berriz and FP Roth. The Synergizer service for translating gene, protein, and other biological identifiers. Bioinformatics 24(19)-2272 (2008).

### Examples

    converted.genes <- convert_Yeast_SGDId_2_systematic(
                       SGD.Ids = c("S000007287", "S000007287", "S000007287"))

    str(converted.genes)

[Package ClusterJudge version 1.12.1 Index]