splitChromosomes {Clonality} | R Documentation

## Chromosome splitting

### Description

Divides the chromosomes into p and q arms.

### Usage

    splitChromosomes(chrom,maploc)

### Arguments

`chrom` | Vector of chromosomes. They should be numeric 1 to 22.
`maploc` | Vector of genomic locations. They should be in Kilobases.

### Details

The function returns the vector of chromosome arms labeled "chr01p", "chr01q", etc. The split into arms is accomplished using the following centers (in Kb) for chromosomes 1 through 22: (122356.96, 93189.90, 92037.54 , 50854.87 ,47941.40, 60438.12 , 59558.27, 45458.05 , 48607.50, 40434.94 , 52950.78, 35445.46 , 16934.00, 16570.00, 16760.00 , 36043.30 , 22237.13, 16082.90 , 28423.62 , 27150.40, 11760.00, 12830.00 ).

### Examples

    #simulated data

    set.seed(100)
    chrom<-rep(c(1:22),each=100)
    maploc<- runif(2200)* 200000
    chromarm<-splitChromosomes(chrom,maploc)

[Package Clonality version 1.38.0 Index]