visualiseExprsList {CiteFuse} | R Documentation

## visualiseExprsList

### Description

A function to visualise the features distribtuion for a list of SingleCellExperiment

### Usage

    visualiseExprsList(
      sce_list,
      plot = c("boxplot", "violin", "jitter", "density"),
      altExp_name = "none",
      exprs_value = "logcounts",
      group_by = NULL,
      feature_subset = NULL,
      cell_subset = NULL,
      n = NULL
    )

### Arguments

`sce_list` | A list of SingleCellExperiment object
`plot` | Type of plot, includes boxplot, violin, jitter, density, and pairwise. By default is boxplot
`altExp_name` | A character indicates which expression matrix is used. by default is none (i.e. RNA).
`exprs_value` | A character indicates which expression value in assayNames is used.
`group_by` | A character indicates how is the expression will be group in the plots (stored in colData).
`feature_subset` | A vector of characters indicates the subset of features that are used for visualisation
`cell_subset` | A vector of characters indicates the subset of cells that are used for visualisation
`n` | A numeric indicates the top expressed features to show.

### Value

A ggplot to visualise te features distribution

### Examples

    data(sce_control_subset, package = "CiteFuse")
    data(sce_ctcl_subset, package = "CiteFuse")
    visualiseExprsList(sce_list = list(control = sce_control_subset,
    ctcl = sce_ctcl_subset),
    plot = "boxplot",
    altExp_name = "none",
    exprs_value = "logcounts",
    feature_subset = c("hg19_CD8A"),
    group_by = c("SNF_W_louvain", "SNF_W_louvain"))

[Package CiteFuse version 1.2.1 Index]