reducedDimSNF {CiteFuse} | R Documentation

## reducedDimSNF

### Description

A function to reduce the dimension of the similarity matrix

### Usage

    reducedDimSNF(sce, metadata = "SNF_W", method = "UMAP", dimNames = NULL, ...)

### Arguments

`sce` | A singlecellexperiment object
`metadata` | indicates the meta data name of affinity matrix to virsualise
`method` | the method of visualisation, which can be UMAP, tSNE and diffusion map
`dimNames` | indicates the name of the reduced dimension results.
`...` | other parameters for tsne(), umap()

### Value

A SingleCellExperiment object

### Examples

    data(sce_control_subset, package = "CiteFuse")
    sce_control_subset <- CiteFuse(sce_control_subset)
    sce_control_subset <- reducedDimSNF(sce_control_subset,
    method = "tSNE",
    dimNames = "tSNE_joint")

[Package CiteFuse version 1.2.1 Index]