visualiseKNN {CiteFuse} | R Documentation

## visualiseKNN

### Description

A function to perform louvain clustering

### Usage

    visualiseKNN(sce, colour_by = NULL, metadata = "SNF_W")

### Arguments

`sce` | A singlecellexperiment object
`colour_by` | the name of coldata that is used to colour the node
`metadata` | indicates the meta data name of affinity matrix to virsualise

### Value

A igraph plot

### Examples

    data(sce_control_subset, package = "CiteFuse")
    sce_control_subset <- CiteFuse(sce_control_subset)
    SNF_W_louvain <- igraphClustering(sce_control_subset,
    method = "louvain")
    visualiseKNN(sce_control_subset, colour_by = "SNF_W_louvain")

[Package CiteFuse version 1.2.1 Index]