withinSampleDoublets {CiteFuse} | R Documentation

## withinSampleDoublets

### Description

doublet identification within batch

### Usage

    withinSampleDoublets(sce, altExp_name = NULL, eps = 200, minPts = 50)

### Arguments

`sce` | a SingleCellExperiment
`altExp_name` | expression name of HTO matrix
`eps` | eps of DBSCAN
`minPts` | minPts of DBSCAN

### Value

A SingleCellExperiment object

### Examples

    data(CITEseq_example, package = "CiteFuse")
    sce_citeseq <- preprocessing(CITEseq_example)
    sce_citeseq <- normaliseExprs(sce = sce_citeseq,
    altExp_name = "HTO",
    transform = "log")
    sce_citeseq <- crossSampleDoublets(sce_citeseq)
    sce_citeseq <- withinSampleDoublets(sce_citeseq,
    minPts = 10)

[Package CiteFuse version 1.2.1 Index]