2ab94a6733195eae1c19304bbdab987b *CITATION
bc478adb1d38c76ca9f4162fc68bd3b3 *DESCRIPTION
c8f08dfae8335eb3a2ece78e918b6cc2 *INDEX
d4a5176056870f8a3a14209be4cdeaec *Meta/Rd.rds
25bc4b4ec31b330a9db1aaae017cd34d *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
bf3eed74e92595871257f3cb1344bfa1 *Meta/hsearch.rds
8bd7cbca8691ef2701f1f4385e7170c1 *Meta/links.rds
a0ca4f466d6dd37a410a2ee957ce3d64 *Meta/nsInfo.rds
2be15138944b238b74258e3e4a90cb1c *Meta/package.rds
379f55d298f9572f1d98439b09d06933 *Meta/vignette.rds
2c6989a4160f54e587717dc36930757a *NAMESPACE
729e24e56f84284df60834a1adacd531 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/Chicago
d8c8ebd830ef7237078c1725f79b04ac *R/Chicago.rdb
b9e4166a04a9ea781a2421c068505e32 *R/Chicago.rdx
be5c025eb1be7bfca21cf1dd10fac3fd *data/cdUnitTest.rda
9eb8fc6ee1d39bc823a5ea6074db1026 *doc/Chicago.R
91e03ffb9903f7c5da93bb38e80e90c5 *doc/Chicago.Rmd
9936efbd865ce2917a35e6c3b41b20e0 *doc/Chicago.html
37492ceff9179c57c963aac08c8ae0fd *doc/index.html
bc7339c0acdef5dd9556e786cd4108c8 *extdata/unitTestChIP/featuresmESC.txt
9a3ab07f0a9d5bca66f6e69a301384e2 *extdata/unitTestChIP/unitTestCTCF_ENCFF001ZQY.broadPeak.bed
50a37b4afbc409ab065ff1be6c0846a9 *extdata/unitTestChIP/unitTestH3K27me3_ENCFF001ZJO.broadPeak.bed
3a0b059f32523b4c2c5c5c200a9a916d *extdata/unitTestChIP/unitTestwgEncodeLicrHistoneEse14H3k27acME0129olaStdPk.broadPeak
f8fe5c018ac5126ad05082f3cf235030 *extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k04me3StdPk.narrowPeak
77875efe530d66bbe85c38beb8edd4de *extdata/unitTestChIP/unitTestwgEncodeSydhHistEse14H3k09me3StdPk.narrowPeak
d33768e766f58986b79f1786e9727304 *extdata/unitTestData/unitTest_mESC_rep1.chinput
176bdad1ce209180fdb676818094ab67 *extdata/unitTestData/unitTest_mESC_rep2.chinput
6d658c9192a9d45438425dd25195491a *extdata/unitTestDesign/unitTest.baitmap
0093ffe703303e3a5d0b6e1a0ef6d660 *extdata/unitTestDesign/unitTest.nbpb
b4bb6de635bb1205e293c61efb750efc *extdata/unitTestDesign/unitTest.npb
60a904049b15186b76b54b9f7fcae9c4 *extdata/unitTestDesign/unitTest.poe
d27a4f83d5f8dda72f4d99ebd8aa5742 *extdata/unitTestDesign/unitTest.rmap
b70696ed8eea9b1051fa36f50518ad8b *extdata/weights/GM12878-2reps.settings
bdaefdfe9a1bc018a82fd584a1b2e182 *extdata/weights/humanMacrophage-7reps.settings
80d6c48f96a472892d2fe4d313a80930 *extdata/weights/mESC-2reps.settings
b0627d2a2129963ae7d2639ad3a67bd3 *help/AnIndex
d7c17dd97a19857726122c597c8743ce *help/Chicago.rdb
3b089bd67c9bdd34d7211dbff3b15ed0 *help/Chicago.rdx
dc40923daeedf7dab599d647aca5457a *help/aliases.rds
02088d4443d081038ea96c7853d137c6 *help/paths.rds
5068637270dd3f0e0e732e1fd31cfef7 *html/00Index.html
b4b67d891c76d5577c2ed1f95db87981 *html/Chicago-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
92330fcfbf0ccbab79a8b4f306619a2a *html/cdUnitTest.html
d1423144b24796b1e12e3c1395b6ddb3 *html/chicagoData.html
8a8ae4c703995e97c283f6135e4fa4bd *html/chicagoPipeline.html
ca5dc51b6d12f20d48224d6354f3a633 *html/copyCD.html
b711392e21d2dbb99d0d8d70a0f3ded1 *html/defaultSettings.html
0b5918b992cd47b96ed132bb4c520444 *html/estimateBrownianComponent.html
11c90ccaf189569e56f53b08c0b2794b *html/estimateDistFun.html
50676f826ff291f153d140d8673e83e4 *html/estimateTechnicalNoise.html
2fe928f070a55147df3871f2a33a6dc7 *html/exportResults.html
d51e32a9d548cd3a572117b39e935981 *html/getPvals.html
5e834eeba9c5738c2784b836e021be71 *html/getScores.html
76d2c4a0cbfaa0a3301852c88d0f9af7 *html/getSkOnly.html
870c40c38c1498f3ed85d9a8027e3c28 *html/mergeSamples.html
4d640400a97bc0a0aa5ad1f9c32614fa *html/modifySettings.html
2773201eec553595b3bfbf3fea076be4 *html/normaliseBaits.html
7c240dd73ca55edfa165fad923a16abd *html/normaliseOtherEnds.html
285554b5c811ad4e8d6b772678bf85ec *html/overlapFragWithFeatures.html
103e81278190e92a379ad06bff9f079a *html/peakEnrichment4Features.html
ec6aa7442d6dae9f539d44ca258f6fc1 *html/plotBaits.html
5d986c0822d75850c1242fbd1d5b3ca7 *html/plotDistFun.html
96ed565b23004f6df62f4585d1993c74 *html/readAndMerge.html
2fc1fb73f37f7bbbd6442e00ca2c3626 *html/readSample.html
83d87364076fa455937a70b2e655563f *html/setExperiment.html
