getGO {ChIPpeakAnno} | R Documentation

## Obtain gene ontology (GO) terms for given genes

### Description

Obtain gene ontology (GO) terms useing GO gene mapping package such as org.Hs.db.eg to obtain the GO annotation.

### Usage

    getGO(all.genes, orgAnn = "org.Hs.eg.db", writeTo, ID_type = "gene_symbol")

### Arguments

`all.genes` | A character vector of feature IDs
`orgAnn` | Organism annotation package such as org.Hs.eg.db for human and org.Mm.eg.db for mouse, org.Dm.eg.db for fly, org.Rn.eg.db for rat, org.Sc.eg.db for yeast and org.Dr.eg.db for zebrafish
`writeTo` | File path for output table
`ID_type` | The feature type in annotatedPeak such as ensembl_gene_id, refseq_id, gene_symbol

### Value

An invisible table with genes and GO terms.

### Author(s)

Lihua Julie Zhu

### See Also

getEnrichedGO

### Examples

      if (interactive()) {
         data(annotatedPeak)
         library(org.Hs.eg.db)
         getGO(annotatedPeak[1:6]$feature,
              orgAnn="org.Hs.eg.db",
              ID_type="ensembl_gene_id")
    }

[Package ChIPpeakAnno version 3.24.2 Index]