enrichedGO {ChIPpeakAnno} | R Documentation

## Enriched Gene Ontology terms used as example

### Description

Enriched Gene Ontology terms used as example

### Usage

    enrichedGO

### Format

A list of 3 dataframes.

list("bp")

  dataframe described the enriched biological process with 9 columns

  go.id:GO biological process id

  go.term:GO biological process term

  go.Definition:GO biological process description

  Ontology: Ontology branch, i.e. BP for biological process

  count.InDataset: count of this GO term in this dataset

  count.InGenome: count of this GO term in the genome

  pvalue: pvalue from the hypergeometric test

  totaltermInDataset: count of all GO terms in this dataset

  totaltermInGenome: count of all GO terms in the genome

list("mf")

  dataframe described the enriched molecular function with the following 9 columns

  go.id:GO molecular function id

  go.term:GO molecular function term

  go.Definition:GO molecular function description

  Ontology: Ontology branch, i.e. MF for molecular function

  count.InDataset: count of this GO term in this dataset

  count.InGenome: count of this GO term in the genome

  pvalue: pvalue from the hypergeometric test

  totaltermInDataset: count of all GO terms in this dataset

  totaltermInGenome: count of all GO terms in the genome

list("cc")

  dataframe described the enriched cellular component the following 9 columns

  go.id:GO cellular component id

  go.term:GO cellular component term

  go.Definition:GO cellular component description

  Ontology: Ontology type, i.e. CC for cellular component

  count.InDataset: count of this GO term in this dataset

  count.InGenome: count of this GO term in the genome

  pvalue: pvalue from the hypergeometric test

  totaltermInDataset: count of all GO terms in this dataset

  totaltermInGenome: count of all GO terms in the genome

### Author(s)

Lihua Julie Zhu

### Examples

    data(enrichedGO)
    dim(enrichedGO$mf)
    dim(enrichedGO$cc)
    dim(enrichedGO$bp)

[Package ChIPpeakAnno version 3.24.2 Index]