oligoFrequency {ChIPpeakAnno} | R Documentation

## get the oligonucleotide frequency

### Description

Prepare the oligonucleotide frequency for given Markov order.

### Usage

    oligoFrequency(sequence, MarkovOrder = 3L, last = 1e+06)

### Arguments

`sequence` | The sequences packaged in DNAStringSet, DNAString object or output of function getAllPeakSequence.
`MarkovOrder` | Markov order.
`last` | The sequence size to be analyzed.

### Value

A numeric vector.

### Author(s)

Jianhong Ou

### See Also

See Also as `oligoSummary`

### Examples

        library(seqinr)
        library(Biostrings)
        oligoFrequency(DNAString("AATTCGACGTACAGATGACTAGACT"))

[Package ChIPpeakAnno version 3.24.2 Index]