0b9b887e498e36ac8be41f9202b9580d *CITATION
080c5bd36a2c988a7f4999b6dd788c14 *DESCRIPTION
6744659ff3271a62cbf2ef66f49d388c *INDEX
f03a76a5ce200393e7cc432260d6ed98 *Meta/Rd.rds
0362b848044c0a743ecdd4921ffded2b *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
4af24066b1f7b5b0d5536b56c3331790 *Meta/hsearch.rds
fa628974851d3f71dfc9944df556afe3 *Meta/links.rds
797ed167138d708adb56f86c4ae8e9d6 *Meta/nsInfo.rds
d5cac660cb0cf60370427b5b407dd35e *Meta/package.rds
b92464f7072c37d2a2834d3d2b37fcd9 *Meta/vignette.rds
97bdfeeadb157e2b9ade69f0a9185970 *NAMESPACE
22f1bb1598f60cb45e56a7e372f3ddaa *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/ChIPanalyser
85d74579c2d64d35f281ad6ce0a09f45 *R/ChIPanalyser.rdb
6cf428decd5a91753ef5a4986421ba3d *R/ChIPanalyser.rdx
4a5189613e7adf5d5a69dd12cdb36452 *data/Rdata.rdb
1f35e0bf8edf69e63642ca04676ea784 *data/Rdata.rds
2338d2ae2df76b829f343ca5416f653c *data/Rdata.rdx
a0ec9de52523db8620a360b0ab5a16ea *doc/ChIPanalyser.R
ceb9c99d0ec9f1f3174530a7e354d646 *doc/ChIPanalyser.Rmd
eea233a5f0c9c637b8bf11ecbee78827 *doc/ChIPanalyser.pdf
24530c0d1d4a120f5f9e2d81c94dee95 *doc/index.html
9d6ba1483902d1aaeb112d11129ebaeb *extdata/BCDSlx.pfm
057e6f85d2b4b8bfbdeb779efd29ca68 *help/AnIndex
ce1758f55e0a003619948d4de193500d *help/ChIPanalyser.rdb
e7c70188f46875a5a7036d97125db171 *help/ChIPanalyser.rdx
654474c93593d208b751034539e4620f *help/aliases.rds
2422e8259cbdc5b11e38e9e69ca2b5f7 *help/paths.rds
248f86d56b4b9259f65bf24b45ec9e89 *html/00Index.html
615070fd8a299c0d7c8382ed99c4afe1 *html/BPFrequency-methods.html
0223144b28f15acc4f1528da227022f3 *html/BPFrequency.html
5e7a09b489641885f2ad6c05ccab5842 *html/BPFrequency_--methods.html
9879510932a89b4b84b85747b7846481 *html/BPFrequency_-.html
f674980f30e831ab78b844c63d3f6b8d *html/ChIPScore-class.html
fe95c38fcc88e94ed070f8b0521972e9 *html/ChIPanalyser-package.html
ed06e3d36066c49173adcfa057e2bff8 *html/DNASequenceLength-methods.html
d94cb6488f4009c19b9b60e3cffd7178 *html/DNASequenceLength.html
da1549ecf5f33fb8df8433428a574fa5 *html/GRList-class.html
33a79773390bb6a334e01f5ef79cf0f5 *html/PFMFormat-methods.html
a183466638312209bf1ca425b029153e *html/PFMFormat.html
e8afd5c7ec4d73156e0816c7586bf7d7 *html/PFMFormat_--methods.html
f5a52b5d08d8b8c847e79174fc40080d *html/PFMFormat_.html
5f9d2978b77bc9b39ecbef0c97ab327e *html/PWMThreshold-methods.html
d4679ee9881983cc0a2df0ed422979b5 *html/PWMThreshold.html
e4baf451d4ddcaa359d3c0ff2acd5273 *html/PWMThreshold_--methods.html
a12012249d93aa8a5c3579aae890343f *html/PWMThreshold_-.html
e0cabe3ebb26d618d6b54591a8db3287 *html/PWMpseudocount-methods.html
f80c0051157ab8f6fdc09e96b76b2b31 *html/PWMpseudocount.html
701e4f9fe252ebcda49ad1f4968f8e8f *html/PWMpseudocount_--methods.html
b6a389f90f37ebf9ac8455fcb3ac9196 *html/PWMpseudocount_-.html
65d67e7bb0c52b91fa1bb46fbb07f1c4 *html/PositionFrequencyMatrix-methods.html
0d0ecd5fb03b18520b00d7124eecf6de *html/PositionFrequencyMatrix.html
6d1a800d78975ccae5d4866cb66545b1 *html/PositionFrequencyMatrix_--methods.html
5c24b681caaf4159ad27d7d2d009522f *html/PositionFrequencyMatrix_-.html
ba113714e01188f6981ca4f8572bf13a *html/PositionWeightMatrix-methods.html
278b5cc50e8f181c077b87b6aa78998d *html/PositionWeightMatrix.html
5f063fb33f0d7dcd05bcce01d3b86515 *html/PositionWeightMatrix_--methods.html
0eaa1cf815fe02128c6b96eaacb2d06f *html/PositionWeightMatrix_-.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
8784d69d05e4232e58116b52316e142b *html/averageExpPWMScore-methods.html
0d08cd4c9037806cada5177ee2318518 *html/averageExpPWMScore.html
f05ddeac12c358196f2e6ae1174f171b *html/backgroundSignal-methods.html
6c96f7f52f81168e333e080efff94ced *html/backgroundSignal.html
acb059dfccc3b11ccb972dd966be6ac3 *html/backgroundSignal_--methods.html
bacc16a24a0ed4756242b47a1ef713e1 *html/backgroundSignal_-.html
7791580f17008eebb26e76dc77fce39a *html/boundMolecules-methods.html
e9ad562c6cee48dd33cacb5fceb2a7fa *html/boundMolecules.html
b54b57f3e5a604e683e56ed37d5329c7 *html/boundMolecules_--methods.html
587d74d0e2ab75710ae1ba10bf90b080 *html/boundMolecules_-.html
67491478b1d6f974d6025c40e8f60da8 *html/chipMean-methods.html
069ba38f0e665293ee47af36bf4857ce *html/chipMean.html
2e8055b1edfa9c08f667d8cdb2628637 *html/chipMean_--methods.html
7a5c56c5c1c4f11de258cbf8cbab83ce *html/chipMean_-.html
0e95eb9cf697cde8f6c6027d67008fac *html/chipSd-methods.html
2946f38074234c551e85da9e72c40817 *html/chipSd.html
fc246aa35505ee6ed41a03ec2c919050 *html/chipSd_--methods.html
c51801d6923a80a1e8aa48dff46a2316 *html/chipSd_-.html
453316ac72fa7793440750f30fd8b731 *html/chipSmooth-methods.html
097a57cb832a2751a9951b5044170dba *html/chipSmooth.html
6573f4e4f80de729f9fee8620f2f6622 *html/chipSmooth_--methods.html
3d030fac955a5f6b215795c7b3902bad *html/chipSmooth_-.html
1c73dbd2a11ddf6d04174c7569b6b320 *html/computeChIPProfile.html
4571cebe07b0d9b30a08434808f50c27 *html/computeGenomeWideScores.html
807381bf3b347b7b640295b5f4f13036 *html/computeOccupancy.html
f15cab9f0dd356ed1fa83caebdf8feb5 *html/computeOptimal.html
6f637862bd54f09e5604917728017b54 *html/computePWMScore.html
dd56b6a7cdb1753d8b55fe040e0ea707 *html/data.html
c5a92f442242c6faf5310170911816c8 *html/drop-methods.html
4ecdebe5fa30977faab2e4f57b45e28e *html/drop.html
c672d63c970ac8f4d599358b82beeca2 *html/genomicProfiles-class.html
edf603127717f7708eea4b40a9b2eb81 *html/genomicProfiles.html
e2228aaae2c1c6cedb7bb0e9cb69038f *html/genomicProfilesInternal-class.html
ebc537d7abf161c458d1320506eb051e *html/initialize-methods.html
70a0af524838458653d0aa84860c934a *html/lambdaPWM-methods.html
af18c38f1a7f5d859ec62985843b83ae *html/lambdaPWM.html
6f7bdb0adb3083ee92cadd0abd3c6826 *html/lambdaPWM_--methods.html
fd26bc57cce4b7bf5304b07b121a894d *html/lambdaPWM_.html
a2d7687944b6634e94e7c9e4a2753345 *html/loci-class.html
3c5ae32c3dd48441108c69b32ef6ef3f *html/loci-methods.html
63024479b487de917b02170bb1b61bf7 *html/loci.html
c98559e2c88016532f2c59a15b55f05e *html/lociWidth-methods.html
8f20765e0e5948e82f64ae9252bf7e32 *html/lociWidth.html
e0c362700cd04c1f1c3ca9be433da2a5 *html/lociWidth_--methods.html
8ac463a9f6beb7113273216a9a5b39e0 *html/lociWidth_.html
1b080b9f8b354cc525e8cbbef7926601 *html/maxPWMScore-methods.html
b76d326eb21bd3c9c76cfe1b4a56a285 *html/maxPWMScore.html
0ef18cefa660b250f693dfe10b9fa5f2 *html/maxSignal-methods.html
6aab7959c0fd01034be65f68a0b71188 *html/maxSignal.html
0e38e98df3f04addbf3f81053036c274 *html/maxSignal_--methods.html
244913fcec0a6c6c960e27362d7f1f04 *html/maxSignal_-.html
0a70a4e860c2bd6033152096273910ab *html/minPWMScore-methods.html
f86d4c4880f09683b0ab07813d3eda88 *html/minPWMScore.html
6c3f7adb41d00a51aabcef8de49b657d *html/naturalLog-methods.html
df5cb4f007ab66ed2359d757abf99923 *html/naturalLog.html
2dd368364160147ba22a7caf800e5025 *html/naturalLog_--methods.html
937f689f64f7dc611912487029d3f125 *html/naturalLog_-.html
82ee426d957adfcd285439d6e3499159 *html/noOfSites-methods.html
ad0a872d53176a2d21e11fb49e3bb603 *html/noOfSites.html
7fdce593a1dcd2334861b7ce9f6aa59e *html/noOfSites_--methods.html
431baf57f121fac8895a4b13500a4676 *html/noOfSites_-.html
f5deb6c7165d55ad2578f3628d281098 *html/noiseFilter-methods.html
e770cb78f149e08ce65fff03f4f5c56a *html/noiseFilter.html
aafb65c2a8d4ef000ade6419d8b8a285 *html/noiseFilter_--methods.html
059b9c04e66b08f50f0319ad4efc2783 *html/noiseFilter_.html
7bf49e1ca90ae84ec041a61c25502118 *html/nos-class.html
9bc2d0496b0b31cdf5dd04de62cd567e *html/parameterOptions-class.html
d2129927c8cdd30e73a6dd1a9c524026 *html/parameterOptions.html
1f71201beaa1ca2f86339df9d1acf892 *html/ploidy-methods.html
da2108c84b4d062a89c84546f2b55031 *html/ploidy.html
e055088926f23e9ef7c5f63c57de3e21 *html/ploidy_--methods.html
46482ad3739b895376998d590421e421 *html/ploidy_-.html
327039eab89e5b8cb2148063f413eebf *html/plotOccupancyProfile.html
4398306d58ac5f3f7d5ae09376e24127 *html/plotOptimalHeatMaps.html
35c783f52d55bf2230f23355894cf2fd *html/processingChIP.html
63ebf718d89467993b6b53a4a9c82aaf *html/profileAccuracyEstimate.html
b08168f8c690289610994b2219413e60 *html/profiles-methods.html
6e14c237f3bd6c1b6ef30bae21a7c8c3 *html/removeBackground-methods.html
b59ae4bbaaf1502eed88fef29f653b36 *html/removeBackground.html
96cdef6d40da61c0cbc6b169d6763b65 *html/removeBackground_--methods.html
95f0e550929767e9feaa6424f7d5682b *html/removeBackground_-.html
66ceb27bc1b282e28a0b746f118ddd98 *html/scores-methods.html
ffca05da8786fb3021f512a53fe0f505 *html/scores.html
6b3593bd082e3dd0a9328d0947b76012 *html/searchSites.html
bec5d97aa591b303bb4c8fbc60dbfc74 *html/show-methods.html
7af2fdf5a0940ef330fd1c9217c2521a *html/stepSize-methods.html
93bd58659a93252596cce0c92e612437 *html/stepSize.html
f2bf5b29879640cc1a9f0fa805b7d45a *html/stepSize_--methods.html
2c09757eb206769f6deb6acada607bec *html/stepSize_-.html
1c4f7e53d347c8ff71cef0c1c7848b21 *html/strandRule-methods.html
613e013680774dc1a464700363a96eac *html/strandRule.html
a43a829d046cd75da43b7d58a5565c67 *html/strandRule_--methods.html
bd332e77da5de15a2855b736e24317e9 *html/strandRule_-.html
558174e899bddee71ba60e1bdbe35e86 *html/whichstrand-methods.html
9d6e0d5fd20a3db55583c2efa43164b4 *html/whichstrand.html
a02ad9cf37bf68ba401d3fc1b481f7f2 *html/whichstrand_--methods.html
87bd276b1206cc32f5d66c9abbe9a6b4 *html/whichstrand_-.html
44ed2ccc83d93602cbf6b70fbe8a1248 *unitTests/GPPWithPFM.rda
1688b10abe4422ac5eab1497ecb38edf *unitTests/OccupancyAccess.rda
8fd1ec7893511fb0ea9bf454380848ff *unitTests/OccupancyNoAccess.rda
7e02b4c5d17e18806627eafd47917c49 *unitTests/PWMScoreAccess.rda
4249c273bbb2e75141c16e2f5b81d40d *unitTests/PWMScoreNoAccess.rda
268749383a8d2936cb89e0ee7eb90451 *unitTests/genomeWideScoringAccess.rda
247410aa163950613b22293046aafad9 *unitTests/genomeWideScoringNoAccess.rda
95d7cf399f22efe20b10cab163e9aa78 *unitTests/test_Units.R
