loci {ChIPanalyser} | R Documentation

## Accessor Method for the `loci` slot in a `ChIPScore` object

### Description

Setter Method for the `loci` slot in a `ChIPScore` object

### Usage

    loci(object)

### Arguments

`object` | `object` is `ChIPScore` object

### Details

When using the `processingChIP`, this functions will return a name GRanges with the loci of interest. These loci will either result from user input or extracted from the ChIP profiles (see `processingChIP` and `lociWidth`). This functions enalbles you to extract those loci from the `ChIPScore object.`

### Value

Returns the value assigned to the `loci` slot in a `ChIPScore` object.

### Author(s)

Patrick C. N. Martin <p.martin@essex.ac.uk>

### References

Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.

### Examples

    # Loading data
    data(ChIPanalyserData)

    eveLocusChip<-processingChIP(eveLocusChip,eveLocus)
    loci(eveLocusChip)

[Package ChIPanalyser version 1.12.0 Index]