9b9c2582daae5dff4ae919557ca5dbbb *DESCRIPTION
6266cd4977f900afcaf6a175785cdeff *INDEX
59aab6870e1ac4e96c430a35875d1969 *Meta/Rd.rds
0ac9f2c1296a1b4d6d5fbe35fc8e12ac *Meta/data.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
e34d426db43e6f9d4b1b38ed1a696dc8 *Meta/hsearch.rds
c0958a062a1fb7a719c27f2fcf9f9521 *Meta/links.rds
ff519c74e989f898b88f0bc26d4223a7 *Meta/nsInfo.rds
e345e3cd1ad2b3f82d330816bed30b6e *Meta/package.rds
a33805244726e84d944d9a83d55e1f0a *Meta/vignette.rds
f22c792c43684d8f72784c7dc6e5d3d3 *NAMESPACE
2ab266dc2d43775aa14ad711d1b68d78 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/ChIPSeqSpike
f4abc6b3fd0f1575bab87ed8855d37ab *R/ChIPSeqSpike.rdb
d5b80719528ca0b392b4778b37776178 *R/ChIPSeqSpike.rdx
b25a6ef65708280681dd50fb7c27dfae *data/datalist
fade11720c5a57972e754b0f82ffc2bc *data/ratio.RData
798d46e8bbbc03aabeed3d10bd64ed9a *data/result_estimateScalingFactors.RData
509e53f9726711bcc54a026b819831f7 *data/result_extractBinding.RData
f461d83b5117306ab31ce332832e0e4e *doc/ChIPSeqSpike.R
5b05e393cf652375d4bab055c4ecd4c8 *doc/ChIPSeqSpike.Rmd
c28ffd0002d6f86ef758f81f50bf5b2b *doc/ChIPSeqSpike.pdf
0e47348204dd0833c3e9601098464a29 *doc/index.html
e1b0857cfa8b9dcb2985422937745d31 *extdata/bam_files/H3K79me2_0_dm3-filtered.bam
b68ec110a950b71a3b13baa15a5dec0a *extdata/bam_files/H3K79me2_0_hg19-filtered.bam
e59bb25fde9cda6353c2d9bbcabcaa3e *extdata/bam_files/H3K79me2_100_dm3-filtered.bam
80bd8e48d6dcda4d760ac1602c31cf9e *extdata/bam_files/H3K79me2_100_hg19-filtered.bam
d6725b83c9229d109a291c3e4b984e7c *extdata/bam_files/H3K79me2_50_dm3-filtered.bam
f3c641290c9b4376058edf23eb6f72ae *extdata/bam_files/H3K79me2_50_hg19-filtered.bam
b2e75b31f0316749aa36a3d9b7c4a761 *extdata/bam_files/input_0_hg19-filtered.bam
8b8148adb9f17d2736a37afedd48a7d6 *extdata/bam_files/input_100_hg19-filtered.bam
7673e3b31cb43524e138b75c1e159cbf *extdata/bam_files/input_50_hg19-filtered.bam
87573393051fa168552ed7cb39dfe7ef *extdata/bigwig_files/H3K79me2_0-filtered.bw
b39be71651fa682c7ca5e74471b99356 *extdata/bigwig_files/H3K79me2_100-filtered.bw
9484358670dca7886ac5c6b183633858 *extdata/bigwig_files/H3K79me2_50-filtered.bw
8a9d30626ddffebcfcb53d73f109debe *extdata/bigwig_files/input_0-filtered.bw
bf1a116f02a8b755d2090aefccd66726 *extdata/bigwig_files/input_100-filtered.bw
3b9df7633e8119547fcd288983cec485 *extdata/bigwig_files/input_50-filtered.bw
0d8a6330967fd2321f34c569b5c49c76 *extdata/empty_files/endoBam_empty.bam
0d8a6330967fd2321f34c569b5c49c76 *extdata/empty_files/exoBam_empty.bam
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/input.wig_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/inputwig_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/inputwig_empty.wig
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wig.file_empty.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wigfile_empty-RPM.bw
d41d8cd98f00b204e9800998ecf8427e *extdata/empty_files/wigfile_empty.bw
82f6c1a5a915e077d1d5e1fb8ffd5dbd *extdata/fastq_fasta_files/endo.fa
82f6c1a5a915e077d1d5e1fb8ffd5dbd *extdata/fastq_fasta_files/exo.fa
54b6999818010f2f7cb7bd8dec20bbe1 *extdata/fastq_fasta_files/reads1.fastq.gz
4ef102a93caa7e70a8bad42948847a75 *extdata/fastq_fasta_files/reads2.fastq.gz
a009a7951861bd4ba706d2ef0111e2b4 *extdata/info.csv
fdbd4dfbae936b378365d7e043376e5a *extdata/test_coord.gff
1d9f6c9669202dd4a146d02723e429c9 *help/AnIndex
261febb520ec4400b909b65824553a77 *help/ChIPSeqSpike.rdb
e13257d463db3eef0c7f93306969d9f3 *help/ChIPSeqSpike.rdx
6a40973d20602ad5b0bb7d6d6aa7f154 *help/aliases.rds
4f27a5500dd94f8c59feb93c43d03219 *help/paths.rds
ad83c18544e5f43205b2f39355c18372 *html/00Index.html
e468bf832165cc27bf4f200317343bf6 *html/ChIPSeqSpikeCore.html
4514229a3a0ec2b811e8ed676fb0e641 *html/ChIPSeqSpikeDataset-class.html
fdfbebff688adc888efe7ea6a174338a *html/ChIPSeqSpikeDatasetBoost-class.html
243a1fc7fb06788c5ea15ecc06dbfccc *html/ChIPSeqSpikeDatasetList-class.html
73edebbe6e0cd982a96e3c29459778af *html/ChIPSeqSpikeDatasetListBoost-class.html
191978d63fcc845c883d61ae676aee60 *html/Experiment-class.html
128b8a0bd82b85405e62f585cbfc8dc8 *html/ExperimentLoaded-class.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
e9760421e70d2a5172257bea38ed6185 *html/averageBindingValues.html
7fda015418e6e7557f5ed3bd8ab8b0cf *html/bigWigFile.html
e37eb51f2a7e11b6985880be6f923a6d *html/boxplotSpike.html
76f0921a5c89e370e94e889b33f58125 *html/count.html
7d8e46d530e9258adfebaca6f6270e27 *html/datasetList.html
caf38b06fdd5e3335448857815a86fa8 *html/estimateScalingFactors.html
05fdeb2104a421cc54ade487cd718fcd *html/exoCount.html
4a0541313fcdba496b644e0c7e816e46 *html/exogenousScalingFactor.html
4940a1dfe472911a957895cdc1e7c018 *html/experimentList.html
633a4257ab63e77eefb00cd918fe8757 *html/exportBigWigs.html
07f5d7d615b83c9d59ff18ea3f2f0a29 *html/extractBinding.html
a2121553fba310f2ee71f361e51e476e *html/getAverageBindingValues.html
ba62fe5972f805ce7e31ffdcdb93b3d6 *html/getBam.html
81f0931e058ed3f2f06f0c4acdd0519e *html/getBigWigFile.html
83a879afad85caaf91fb48e3631b6b0d *html/getCount.html
c16be07e61bae11194f38a2a3d44bb07 *html/getDatasetList.html
e3239dac304268a6f8e8e806dc4edb4b *html/getExoCount.html
5a34e31921d9f6c3399c7c59bafa1a75 *html/getExogenousBam.html
dd0a975650168be7aac1d8ab84ccc272 *html/getExogenousScalingFactor.html
e761c6e58d21e2ae567eabecf8ec9ebf *html/getExpName.html
1e1b4a511dfc01ae95f7813d470f516d *html/getExperimentList.html
3771e1e2034cd6b103f12598271afae6 *html/getExperimentListBigWigs.html
f554f9123b83bce22b8c81649b9eb6e1 *html/getLoadedData.html
42ade57fde3803518509825feda904b1 *html/getMatBindingValues.html
670b4fab98c6e7c1324dd52a28dc1a26 *html/getRatio.html
11322c9f2478c083d596014c28827747 *html/getScalingFactor.html
dda6dd5de9ce67e881d7e92b1db0c84c *html/inputSubtraction.html
7afee0acf3d69a13556b06cae99815a1 *html/matBindingValues.html
c36867040058807d172bc0997fe58925 *html/plotCor.html
28484c49647df57b1c07cd1ea0100166 *html/plotHeatmaps.html
442871fa0edf3593eb40138525169b0f *html/plotProfile.html
c1b69aa613c7e11c1e5fb69b811d41ec *html/plotTransform.html
44d748d69d1b6f5e64c0e048b5c7a034 *html/ratio.html
5ee7e4f6b1416a738fc3435c77ebfaeb *html/result_data.html
1e29b42bf0213ef2ef5a60afc6bfaecc *html/scaling.html
7b7c819bb9890f9b990bf682dfabbe5a *html/scalingFactor.html
f62650f6415c174dc6537921accdc96c *html/spikeDataset.html
2731c665aa6c7e4bb211ab5d2198c5ee *html/spikePipe.html
3b5e0983a782908623be6272665c84f7 *html/spikeSummary.html
