Package: CexoR
Version: 1.28.0
Date: 2020-06-29
Type: Package
Title: An R package to uncover high-resolution protein-DNA interactions
        in ChIP-exo replicates
Author: Pedro Madrigal <bioinformatics.engineer@gmail.com>
Description: Strand specific peak-pair calling in ChIP-exo replicates.
        The cumulative Skellam distribution function (package
        'skellam') is used to detect significant normalised count
        differences of opposed sign at each DNA strand (peak-pairs).
        Irreproducible discovery rate (IDR) for overlapping peak-pairs across
        biological replicates is estimated using the package 'idr'.
Depends: R (>= 2.10.0), S4Vectors, IRanges
Maintainer: Pedro Madrigal <bioinformatics.engineer@gmail.com>
Imports: Rsamtools, GenomeInfoDb, GenomicRanges, rtracklayer, idr,
        RColorBrewer, genomation
Suggests: RUnit, BiocGenerics, BiocStyle
License: Artistic-2.0 | GPL-2 + file LICENSE
LazyLoad: yes
LazyData: yes
biocViews: Transcription, Genetics, Sequencing
git_url: https://git.bioconductor.org/packages/CexoR
git_branch: RELEASE_3_12
git_last_commit: 3641236
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 00:54:01 UTC; biocbuild
Built: R 4.0.3; ; 2020-10-28 13:48:06 UTC; windows
