heatPlot {CeTF} | R Documentation

## Heatmap-like functional classification

### Description

Heatmap-like functional classification to visualize the enrichment analysis results from `getEnrich` function. The plot contains the heatmap with the associated pathways genes, the significance of the enrichment and a barplot with the enrichment ratio.

### Usage

    heatPlot(res, diff, showCategory = 10, font_size = 6)

### Arguments

`res` | A dataframe with `getEnrich` results.
`diff` | A dataframe with all differentialy expressed genes obtained from `runAnalysis` function. For better understanding, simply use the `getDE` accessor with 'all' option.
`showCategory` | Number of enriched terms to display (default: 10).
`font_size` | Size of gene row names (default: 6).

### Value

Returns a Heatmap-like functional classification

### Examples

    # loading enrichdemo and CeTFdemo object
    data(enrichdemo)
    data(CeTFdemo)

    heatPlot(res = enrichdemo$results,
             diff = getDE(CeTFdemo, 'all'),
             showCategory = 10)

[Package CeTF version 1.2.4 Index]