fe2b5ba69d9d0457f00a9558aa984316 *DESCRIPTION
45ca093c42c763eed94e0db0b1b9d03c *INDEX
d8e5e7719afd399f16c3d506521a1d86 *Meta/Rd.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
e8b260a4b61efec249ee19a3a9df44f4 *Meta/hsearch.rds
9948c03382fa9a933eb2108de96d4072 *Meta/links.rds
1c350c814c12e55d03c7aacdeee1f3af *Meta/nsInfo.rds
e39c020b0a401c8fb4e53df54e4706c7 *Meta/package.rds
cf7d4c6e7e939a9309b062422156e818 *Meta/vignette.rds
08758e948f8fd6da2a8cf92ab036b105 *NAMESPACE
d6c68f1fe41ced6e98a766a3757313da *R/CausalR
5f28985f5145df9a085ddd9f080f3b7e *R/CausalR.rdb
7549e21b081c9aca0c129c1439a58374 *R/CausalR.rdx
87ca3323acd303fc4a4f65d3fe1ad03c *doc/CausalR.R
888634e35ea6a191a910b9ca5d009533 *doc/CausalR.pdf
d25e999e4973f96c3bec90f95bb8a7a9 *doc/CausalR.rnw
3eb3b861b47cbb5b43413f2cc9876806 *doc/index.html
d0c4d2301234bafb36c5ada77a8f88da *extdata/testData.txt
5aa80e0e5bc1159c049304ee9aade184 *extdata/testData1.txt
4164dc49f6ad3051c6a1719ca775c6ac *extdata/testNetwork.sif
a3452071c00c0afea656573a57f76602 *extdata/testNetwork1.sif
4626353beff91bb0c7edc2bc3648c612 *help/AnIndex
d5a4151332ca44c9a587b091caa9321f *help/CausalR.rdb
f93f56e130339330d457b9fa56513d32 *help/CausalR.rdx
f6fe20a20226e4d21e94a156de04813c *help/aliases.rds
1644c18ebd7666ccb92995d40206c17a *help/paths.rds
6c71e916c8e2405e823b8053a4645eb5 *html/00Index.html
707d68902172e9efe6c223cce72bb2ef *html/AddIDsToVertices.html
e04504d0accce7f4add11c91f54b393b *html/AddWeightsToEdges.html
b80bf708d1d5c22997771150e71235c3 *html/AnalyseExperimentalData.html
98e373b7137b3b171df89c5c990aca33 *html/AnalysePredictionsList.html
a1f423cc3fd787936fa337368d150933 *html/CalculateEnrichmentPValue.html
a3fb0a20cc644dac00149436460f5061 *html/CalculateSignificance.html
1cae36841baa073979eed6ac67a76370 *html/CalculateSignificanceUsingCubicAlgorithm.html
894e3b2b0822842ac1e4b88bd415fa03 *html/CalculateSignificanceUsingCubicAlgorithm1b.html
395c134bb1217fe494b50200dc3a66be *html/CalculateSignificanceUsingQuarticAlgorithm.html
4418ef5dfca29158eec3a3f575557ca6 *html/CalculateTotalWeightForAllContingencyTables.html
c3ac385353c3e41daa74ef97fcde4a17 *html/CalculateWeightGivenValuesInThreeByThreeContingencyTable.html
826e8d178dfb1db6cda2c036287bfacd *html/CausalR-package.html
fba86ab3d0b5218a97e3238b8ecf71d5 *html/CheckPossibleValuesAreValid.html
1161f23c3d4a06a251577a506406e5a2 *html/CheckRowAndColumnSumValuesAreValid.html
50b745ab540ec4da6dc6364525c33a22 *html/CompareHypothesis.html
4b1b84fc80b59fcc3b4d7855997694ac *html/ComputeFinalDistribution.html
3edb4d1e62bde1cb0cbe6bb9af3acf47 *html/ComputePValueFromDistributionTable.html
2dd7214895dd2ea9f28a1888c9c180e8 *html/CreateCCG.html
33288313a32c929507bf806bb8cb43c0 *html/CreateCG.html
f0050f9fc22de00d1046342412c384b3 *html/CreateNetworkFromTable.html
b24d5843728d010fa415503bb87b628f *html/DetermineInteractionTypeOfPath.html
b61cf76923c25d58f6d69e93e363074d *html/FindApproximateValuesThatWillMaximiseDValue.html
8cec19f094f1d65201312aadc34b845a *html/FindIdsOfConnectedNodesInSubgraph.html
d8d65f41c30f4fc51c1956769109cf5f *html/FindMaximumDValue.html
62251754b4896905c1a04abeb023c8a3 *html/GetAllPossibleRoundingCombinations.html
592f03a0293ccd2ff94747cb016db11d *html/GetApproximateMaximumDValueFromThreeByTwoContingencyTable.html
ac99c2a0b28e74d5214997e9cce30245 *html/GetApproximateMaximumDValueFromTwoByTwoContingencyTable.html
b21100bedac77b101375b6b278d7b6af *html/GetCombinationsOfCorrectandIncorrectPredictions.html
c94545b1101310674c7dd46058e69519 *html/GetExplainedNodesOfCCG.html
343a9e95e5c401b613979609c0aa43cd *html/GetInteractionInformation.html
4ba3e65f7e7609b7fe6c9db7387b907d *html/GetMatrixOfCausalRelationships.html
73ae47e882eb890e4546fce4282e2978 *html/GetMaxDValueForAFamily.html
9bd3698153bc0fa0bc2128b4ce393efa *html/GetMaxDValueForAThreeByTwoFamily.html
75412cb440c58eef34396684612e9707 *html/GetMaximumDValueFromTwoByTwoContingencyTable.html
531fcbc4ec88f4394b42f0b49a81bc75 *html/GetNodeID.html
9e031eee8193b285a946aa25b54808f1 *html/GetNodeName.html
83af3984080cc9bc6d2508cb70b692bb *html/GetNumberOfPositiveAndNegativeEntries.html
3d2f62919fc8b7d9ea18383767ee5872 *html/GetPathsInSifFormat.html
37dcbfa557ee99e90978627b3e917be9 *html/GetRegulatedNodes.html
130fba28d7bf0f06d7c04bae75590bc0 *html/GetRowAndColumnSumValues.html
b5763880765aa74e2d86c7232c3a1e4b *html/GetScoreForNumbersOfCorrectandIncorrectPredictions.html
093b13046bb02136a56f37ef8573d8e8 *html/GetScoresForSingleNode.html
05a63d19b729dbc521d68fe2b22133b4 *html/GetScoresWeightsMatrix.html
6071c711ff611b6888919cf4e0277570 *html/GetScoresWeightsMatrixByCubicAlg.html
a9b33f535ca0ea947d0f5bad585dded3 *html/GetSetOfDifferentiallyExpressedGenes.html
8759f11b95a359fba49eafd11738230c *html/GetSetOfSignificantPredictions.html
e918bc2c6e458e189ff5837b93bc9df4 *html/GetShortestPathsFromCCG.html
00e2e7f2bed1fa900e12fc10e2602730 *html/GetWeightForNumbersOfCorrectandIncorrectPredictions.html
a4f469d67f1e7ef6605da394c29699a1 *html/GetWeightsAboveHypothesisScoreAndTotalWeights.html
d894977dfabb4881fd391a368500568f *html/GetWeightsAboveHypothesisScoreForAThreeByTwoTable.html
7783d3f0112712024dc167af5f216125 *html/GetWeightsFromInteractionInformation.html
34ad0aa3023281772bbc0537719902db *html/MakePredictions.html
8952093ba7f62195562c857bb10d3361 *html/MakePredictionsFromCCG.html
98fee84ba978048c25ed442701b8cfca *html/MakePredictionsFromCG.html
88a3361f5749235bc33e7081f9576918 *html/OrderHypotheses.html
4fbeb5a50db3b1830eb44e5189aa9346 *html/PlotGraphWithNodeNames.html
70e3f2cf0e7c4115deda4f0cea9a0aca *html/PopulateTheThreeByThreeContingencyTable.html
c9038bb44ce3340a1a7fe1c35da0056f *html/PopulateTwoByTwoContingencyTable.html
6a5615a81a225a71cd1728b529fa1f2a *html/ProcessExperimentalData.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
ef8a62fab38c5df0051681f4833b5cbe *html/RankTheHypotheses.html
b0ca66c7c42c88a769e743d1bd29d7e6 *html/ReadExperimentalData.html
ab2493d5966e24c023591ac033a8855a *html/ReadSifFileToTable.html
0a703739423aaf2ecfa16471e0748987 *html/RemoveIDsNotInExperimentalData.html
66226bd30d55f9b6074a86d29bde3fcb *html/ScoreHypothesis.html
dfa3e6b83ed844853fcabfadc72416fe *html/ValidateFormatOfDataTable.html
3ba1df21d22d552c538bb5295777b60f *html/ValidateFormatOfTable.html
42aec370da595fa2cfff4e0898fc02f6 *html/WriteAllExplainedNodesToSifFile.html
0294d8e63fcb7fd4b2b063340f37ad37 *html/WriteExplainedNodesToSifFile.html
5ae8d9c7e50965fee08f2446aeede737 *html/runRankHypothesis.html
51e1dd1e25eae298ab48883b5ed0a1f0 *html/runSCANR.html
34ba6c40f4d189fc99b88eea72d43077 *testData/CCGWithTwoLevels.txt
8298393b0899876e589e05349667c3a9 *testData/network_with_conflict.sif
a560534fa5030bf2338d965592ff160a *testData/network_with_difflength_conflict.sif
6d6cd90f38a2c10d5ea28e2742e9e249 *testData/network_with_loop.sif
4b090fddaad7c4df93b2ba0e9d276956 *testData/test_ExperimentalData.txt
f4896b64aedcde1b431e8e7452a3db8a *testData/test_network.sif
34ba6c40f4d189fc99b88eea72d43077 *unitTests/CCGWithTwoLevels.txt
bbab07316af07bc18ff8bb6cca94ade3 *unitTests/CheckEdgeForTest_SifFileReader.r
b1d65b9bf20fa30896b1a12306d3a124 *unitTests/CreateCGForTest_RankTheHypotheses.r
f9565791ec9773760c03702fe9a78a90 *unitTests/CreateInteractionInfoTableForTest_SifFileReader.r
ffbf2af792e669e99609056f4672a9a7 *unitTests/CreateNetworkForTest_SifFileReader.r
123c67a8afb825b021a9864f60e10fd2 *unitTests/CreateSimpleNetworkForTest_ComputationalCausalGraphCreator.r
007075b99e70b66bef0fad805707fa39 *unitTests/CreateTestTableForTest_SifFileReader.r
8f2c55d9f885e12400a6474b92a2e86d *unitTests/DetermineInteractionTypeOfPath.r
51ac92a1439355520e9e7a9e026ea4e7 *unitTests/GetMatrixOfCausalRelationships.r
e7731f8d68313dcfff95a601831ce04c *unitTests/RemoveIDsNotInExperimentalData.r
8298393b0899876e589e05349667c3a9 *unitTests/network_with_conflict.sif
a560534fa5030bf2338d965592ff160a *unitTests/network_with_difflength_conflict.sif
6d6cd90f38a2c10d5ea28e2742e9e249 *unitTests/network_with_loop.sif
de42cd056886cb0cbc12c8ac76e307aa *unitTests/test_CausalReasoningPredictions.R
ec5880a18a5dcd9adde6544197a2ed51 *unitTests/test_CubicAlgorithm.R
48331a4b2428088bc8716c280ca71c4c *unitTests/test_CubicAlgorithm1b.R
de3b2fb36d06202de15a5536de671be2 *unitTests/test_EnrichmentPValueCalculation.R
4b090fddaad7c4df93b2ba0e9d276956 *unitTests/test_ExperimentalData.txt
f42e69deb018fdb44fcb75161f145a11 *unitTests/test_ExperimentalDataReader.R
7c77c3e9fe79949ae368cd11d2ce2a71 *unitTests/test_HypothesisScorer.R
906ee2fc04f414d125db71aa0f1bc75b *unitTests/test_InputNodes.txt
022897eb86432e7f37be347b33452a38 *unitTests/test_NodeInclusionFile.txt
be16cdee1cf02a44b44505e2c1ff5efb *unitTests/test_QuarticAlgorithm.R
ecefa26f7be645f06429b17e7d248f52 *unitTests/test_RankTheHypotheses.R
f3a5353f55ec75c577eb0924d8c8cf54 *unitTests/test_SifFileReader.R
b7ef184bc3fda30c1eda36c9353258d2 *unitTests/test_SignificanceCalculator.R
202353c19c4305c7893412836c6b3875 *unitTests/test_WriteExplainedNodesToSifFile.R
f4896b64aedcde1b431e8e7452a3db8a *unitTests/test_network.sif
