retrieve peaks and ploidy {CNAnorm} | R Documentation

## Methods for Function to retrieve suggested/validated ploidy and peaks in Package ‘CNAnorm’

### Description

`sugg.peaks` returns the location of peaks before normalization as suggested by `peakPloidy`.

`sugg.ploidy` returns the ploidy of the peaks as suggested by `peakPloidy`.

`valid.peaks` returns the location of peaks before normalization as validated after calling method `"validation"`

`valid.ploidy` returns the validated ploidy of the peaks as validated after calling method `"validation"`

### Usage

    sugg.peaks(object)
    sugg.ploidy(object)
    valid.peaks(object)
    valid.ploidy(object)

### Arguments

`object` | An object of Class `"CNAnorm"` after method `"peakPloidy"` was called

### Value

A numeric vector

### Author(s)

Stefano Berri <s.berri@leeds.ac.uk>

### See Also

`gcNorm`, `CNAnorm-class`, `DNAcopy`

### Examples

    data(CN)
    # see peakPloidy documentation to know how object CN is created
    plot(sugg.ploidy(CN), sugg.peaks(CN))

[Package CNAnorm version 1.36.0 Index]