82c00b01afab8cc7247470e55d2775e7 *CITATION
aba6efdf43fab6e1f8994f56f7a2e95d *DESCRIPTION
7cba324e068e87cb387ecfb23ef44ab7 *INDEX
5b606545b5eb8a20ebe5ac056065174e *Meta/Rd.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
eecd34566eaf42a2890e06e483d1c9f4 *Meta/hsearch.rds
d5a4a180b606a9f8be940650bdd170f0 *Meta/links.rds
541e0448847cd69053ceb30d163a1635 *Meta/nsInfo.rds
1a02aea072fcf06778e867f253fb1249 *Meta/package.rds
291513ed1a82f307a0ddd96b9ebfac6a *Meta/vignette.rds
aff5d3095281b8696bb8f8dbee94bf4e *NAMESPACE
571d6af29b43b04ce35483899ec9b0ca *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/CHRONOS
24bdff95fc710e9eebc042878bae7a63 *R/CHRONOS.rdb
474f31ecd5d0f866b06167f5adc0aac4 *R/CHRONOS.rdx
5060cd035b4e479ec4b608a1cf513f95 *doc/CHRONOS.R
7cbdd0127ad5f77a0ee7c6ee3b48063a *doc/CHRONOS.Rmd
802b1d56d4d0412f117ba19dd3e26556 *doc/CHRONOS.pdf
f9260aa5f28bca1bcb77cbf2f18f4926 *doc/index.html
8d1c8068f1e84c53b28cbe095f4801f5 *extdata/Downloads/KEGG/hsa/hsa04915.xml
40ef2ba0fbdc3b2a3a78eddadb990099 *extdata/Downloads/KEGG/hsa/hsa04917.xml
bd05b84234ad3f33ae6ea7516c7f4f97 *extdata/Downloads/KEGG/hsa/hsa04930.xml
263f5c1323dd479aa9781f0455f831ca *extdata/Downloads/KEGG/hsa/hsa05031.xml
5c86930303076b56fffb2124659ee722 *extdata/Downloads/mirbase/miRNAmaps_cel.RData
a0cb7ea78b15e55988d9ac247456bcbe *extdata/Downloads/mirbase/miRNAmaps_cfa.RData
20656607818c5a6e0f0999336c998947 *extdata/Downloads/mirbase/miRNAmaps_dme.RData
6ac71ed83a95d7c3be06257ba71cfe4c *extdata/Downloads/mirbase/miRNAmaps_dre.RData
d801f193d9043e618fc4db0cd5a12bab *extdata/Downloads/mirbase/miRNAmaps_gga.RData
848308837e8a4b8c8c9dda5b2b3b0338 *extdata/Downloads/mirbase/miRNAmaps_hsa.RData
f26276ab1d447631f168ed71619f0300 *extdata/Downloads/mirbase/miRNAmaps_mmu.RData
d886c18f5539936ff080e8a078f91513 *extdata/Downloads/mirbase/miRNAmaps_oar.RData
61f80721ee625b915c5e278e32f1878d *extdata/Downloads/mirbase/miRNAmaps_rno.RData
ba0338a0619071b90c76159b19b7dda0 *extdata/Examples/data.RData
8d1c8068f1e84c53b28cbe095f4801f5 *extdata/Examples/kgml/hsa04915.xml
40ef2ba0fbdc3b2a3a78eddadb990099 *extdata/Examples/kgml/hsa04917.xml
bd05b84234ad3f33ae6ea7516c7f4f97 *extdata/Examples/kgml/hsa04930.xml
263f5c1323dd479aa9781f0455f831ca *extdata/Examples/kgml/hsa05031.xml
80be6b7034da70420088ae883e122025 *extdata/User/TarBase.xlsx
b73847dc20f74e19d50f266e54a900a9 *extdata/User/interestingGenes.txt
f5bd80c56bd4310f22a950f561b4db72 *extdata/User/mRNAexpressions.txt
6209f09eb733f87ac17256483bfcef3a *extdata/User/miRNAexpressions.txt
6da5e89fa7bb7b55bef94a3f3fbeb067 *extdata/User/miRecords.xlsx
67b9999ac058bfbe67206f9d90700dbe *help/AnIndex
fbd520f5fe34554d669a95c96e208c43 *help/CHRONOS.rdb
f0c22a04f48f42f69e44a429acd74915 *help/CHRONOS.rdx
b2a0302223343000af7c3d2b380d99c4 *help/aliases.rds
8c50d05f0f156292b30b2a3787b905be *help/paths.rds
ad42f3c165caf8028515f95b00a698a8 *html/00Index.html
d550d8e252a59e511872b558ebabd492 *html/CHRONOSrun.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
fb5084f0d909aa1be9970f5433f82003 *html/convertMiRNANomenclature.html
817bbf79657d95ccd566ba3951e64f58 *html/convertNomenclature.html
65816e2bdb42c10199cb6d98a8153ac3 *html/createPathwayGraphs.html
b0d9910f1c0be419b0ba88c432252e81 *html/downloadKEGGPathwayList.html
d08b914a7e8d0ae97f0f2e268ab01a00 *html/downloadMiRecords.html
9f7ef691ccbe88666dce4c1af669afa7 *html/downloadPathways.html
278039db5b63fe95b703587e5561ff85 *html/extractLinearSubpathways.html
0f1a5d27a907ff537124203e187d9c0b *html/extractNonLinearSubpathways.html
79ccd7e0560bcdbbe7b45dff435254ce *html/getEdgeTypes.html
93d0035f1083bb18f7ce425b338cfd0b *html/importExpressions.html
12a1ea821ffd48415b024803523c4ecb *html/pathwayMeasures.html
44456984940c1b5366cc2808cab02d02 *html/scoreSubpathways.html
41e53a9cace43d7877ea4a9e4d4ab9d0 *html/subpathwayKEGGmap.html
9d759f2f9f42bf778d2e818075f196bd *html/subpathwayMiRNAs.html
e27403ac77d69f993b0c20013eeb3b50 *html/visualizeResults.html
5b871fbb3592af29b328450307e42a72 *java/CHRONOS.jar
f26364f968916f546b7b86cf122f27c3 *unitTests/test_CHRONOSrun.R
4f7aefd3040ac2c26db999d47096f53d *unitTests/test_pathwayToGraph.R
3d1e948699f5b4b9d0c25fa99afce3c6 *unitTests/test_subExtractionLinear.R
b5a2804bef03d6cca7315e983cd6852d *unitTests/test_subExtractionNonLinear.R
8c9ceaeb0876827e50e9468aadb3f67b *unitTests/test_subRefinement.R
3100a07ec828065bfc818a701ef293e3 *unitTests/test_subVisualization.R
