get_merged_mods {CEMiTool} | R Documentation

## Merge similar modules

### Description

This function takes a CEMiTool object with expression and a vector of numeric labels to merge similar modules.

### Usage

    get_merged_mods(cem, ...)

    ## S4 method for signature 'CEMiTool'
    get_merged_mods(cem, mods, diss_thresh = 0.8, verbose = FALSE)

### Arguments

`cem` | Object of class `CEMiTool`.
`...` | Optional parameters.
`mods` | A vector containing numeric labels for each module gene
`diss_thresh` | A threshold of dissimilarity for modules. Default is 0.8.
`verbose` | Logical. If `TRUE`, reports analysis steps. Default `FALSE`

### Value

Numeric labels assigning genes to modules.

### Examples

    # Get example expression data
    data(expr0)
    # Initialize new CEMiTool object with expression data
    cem <- new_cem(expr0, filter=TRUE, apply_vst=FALSE)
    # Calculate adjacency matrix with example beta value 8
    cem <- get_adj(cem, beta=8)
    # Get modules
    mods <- get_mods(cem)
    # Merge similar modules
    merged_mods <- get_merged_mods(cem, mods)

[Package CEMiTool version 1.14.1 Index]