Package: CARNIVAL
Title: A CAusal Reasoning tool for Network Identification (from gene
        expression data) using Integer VALue programming
Version: 1.2.0
Author: Enio Gjerga <enio.gjerga@gmail.com>
	 Panuwat Trairatphisan
	 Anika Liu
	 Alberto Valdeolivas
	 Nikolas Peschke
Maintainer: Enio Gjerga <enio.gjerga@gmail.com>
Description: An upgraded causal reasoning tool from Melas et al in R with updated assignments of TFs' weights from PROGENy scores. 
             Optimization parameters can be freely adjusted and multiple solutions can be obtained and aggregated.
URL: https://github.com/saezlab/CARNIVAL
BugReports: https://github.com/saezlab/CARNIVAL/issues
Depends: R (>= 4.0)
Imports: doParallel, readr, viper, AnnotationDbi, Category, ggplot2,
        UniProt.ws, lpSolve, igraph
biocViews: Transcriptomics, GeneExpression, Network
License: Apache License (== 3.0) | file LICENSE
LazyData: true
Encoding: UTF-8
Suggests: knitr, readxl, testthat (>= 2.1.0)
VignetteBuilder: knitr
RoxygenNote: 7.0.2
git_url: https://git.bioconductor.org/packages/CARNIVAL
git_branch: RELEASE_3_12
git_last_commit: b0141d1
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 00:47:18 UTC; biocbuild
Built: R 4.0.3; ; 2020-10-28 13:45:54 UTC; windows
