CTSScumulativesTagClusters {CAGEr} | R Documentation

## Get/set CTSS cumulative TC or CC data

### Description

Accessor function.

### Usage

    CTSScumulativesTagClusters(object, samples = NULL)

    ## S4 method for signature 'CAGEset'
    CTSScumulativesTagClusters(object, samples = NULL)

    ## S4 method for signature 'CAGEexp'
    CTSScumulativesTagClusters(object, samples = NULL)

    CTSScumulativesCC(object, samples = NULL)

    ## S4 method for signature 'CAGEset'
    CTSScumulativesCC(object, samples = NULL)

    ## S4 method for signature 'CAGEexp'
    CTSScumulativesCC(object, samples = NULL)

    CTSScumulativesTagClusters(object) <- value

    ## S4 replacement method for signature 'CAGEset'
    CTSScumulativesTagClusters(object) <- value

    ## S4 replacement method for signature 'CAGEexp'
    CTSScumulativesTagClusters(object) <- value

### Arguments

`object` | A `CAGEset` or `CAGEset` object.
`samples` | One or more valid sample names.
`value` | CTSScumulativesTagClusters data

### Value

List of numeric Rle.

### See Also

Other CAGEr clusters functions: `CTSSclusteringMethod`, `CustomConsensusClusters`, `aggregateTagClusters`, `clusterCTSS`, `consensusClustersDESeq2`, `consensusClustersGR`, `cumulativeCTSSdistribution`, `plotInterquantileWidth`, `quantilePositions`, `tagClusters`

Other CAGEr accessor methods: `CTSSclusteringMethod`, `CTSScoordinates`, `CTSSnormalizedTpm`, `CTSStagCountTable`, `CTSStagCount`, `GeneExpDESeq2`, `GeneExpSE`, `consensusClustersGR`, `genomeName`, `inputFilesType`, `inputFiles`, `librarySizes`, `sampleLabels`, `seqNameTotalsSE`, `tagClusters`

[Package CAGEr version 1.32.1 Index]