convertGRanges2GPos {CAGEfightR} | R Documentation

## Convert GRanges with scores to GPos

### Description

Converts a GRanges to a GPos, correctly expanding the score column. This is useful is nearby CTSSs with the same count are grouped in the same range (see example).

### Usage

    convertGRanges2GPos(object)

### Arguments

`object` | GRanges object with a score column

### Value

GPos with score column

### Examples

    # Example GRanges
    gr <- GRanges(Rle(c("chr2", "chr2", "chr3", "chr4")),
                  IRanges(start=c(1, 10, 5, 3),
                  end=c(5L, 10L, 5L, 4L)),
                  strand="+",
                  score=c(2, 1, 3, 11))

    # Expand to proper GPos / CTSS format:
    gp <- convertGRanges2GPos(gr)

    # Double check that the total number of counts remains the same
    stopifnot(sum(score(gr) * width(gr)) == sum(score(gp)))

[Package CAGEfightR version 1.10.0 Index]