quickGenes {CAGEfightR} | R Documentation

## Identify and quantify genes.

### Description

A convienient wrapper around assignGeneID, and quantifyGenes. Also removes unstranded features

### Usage

    quickGenes(object, geneModels = NULL, ...)

### Arguments

`object` | RangedSummarizedExperiment: Location and counts of clusters, usually found by calling quantifyClusters.
`geneModels` | TxDb or GRanges: Gene models via a TxDb, or manually specified as a GRangesList.
`...` | additional arguments passed to assignGeneID.

### Value

RangedSummarizedExperiment containing gene expression and clusters assigned within each gene.

### See Also

Other Wrapper functions: `quickEnhancers()`, `quickTSSs()`

### Examples

    # See the CAGEfightR vignette for an overview!

[Package CAGEfightR version 1.10.0 Index]