SummarizedExperiment_to_nmr_dataset_peak_table {AlpsNMR} | R Documentation

## Import SummarizedExperiment as mr_dataset_peak_table

### Description

Import SummarizedExperiment as mr_dataset_peak_table

### Usage

    SummarizedExperiment_to_nmr_dataset_peak_table(se)

### Arguments

`se` | An SummarizedExperiment object

### Value

nmr_dataset_peak_table An nmr_dataset_peak_table object (unmodified)

### Examples

    dir_to_demo_dataset <- system.file("dataset-demo", package = "AlpsNMR")
    dataset <- nmr_read_samples_dir(dir_to_demo_dataset)
    dataset_1D <- nmr_interpolate_1D(dataset, axis = c(min = -0.5, max = 10, by = 2.3E-4))
    meta <- file.path(dir_to_demo_dataset, "dummy_metadata.xlsx")
    metadata <- readxl::read_excel(meta, sheet = 1)
    dataset_1D <- nmr_meta_add(dataset_1D, metadata = metadata, by = "NMRExperiment")
    metadata <- list(external = dataset_1D[["metadata"]][["external"]])
    peak_table <- nmr_data(dataset_1D)
    nmr_peak_table <- new_nmr_dataset_peak_table(peak_table, metadata)
    se <- nmr_dataset_peak_table_to_SummarizedExperiment(nmr_peak_table)
    nmr_peak_table <- SummarizedExperiment_to_nmr_dataset_peak_table(se)

[Package AlpsNMR version 3.0.6 Index]