ASpliAS-class {ASpli} | R Documentation

## Class `"ASpliAS"`

### Description

Results of PSI and PIR using experimental junctions

### Slots

`irPIR`:

  Reports: event, e1i counts (J1), ie1 counts (J2), j_within (J3), PIR by condition. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.

`altPSI`:

  Reports: event, J1 (start), J2 (end), J3 (exclusion), PSI. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.

`esPSI`:

  Reports: event, J1 (start), J2 (end), J3 (exclusion), PSI. J1, J2, J3 sum of junctions (J1, J2, J3) by condition.

`join`:

  It is a combination of irPIR, altPSI and esPSI tables

`junctionsPIR`:

  PIR metric for each experimental junction using e1i and ie2 counts. Exclusion junction is the junction itself. This output helps to discover new introns as well as new retention events

`junctionsPJU`:

  Given a junction, it is possible to analyze if it shares start, end or both with another junction. If so, is because there is more than one way for/of splicing. Ratio between them along samples is reported.

`targets`:

  DataFrame with targets.

`.ASpliVersion`:

  ASpli version when this object was created. It should not be modified by the user.

### Author(s)

Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky, Ariel Chernomoretz

### See Also

Methods: `AsDiscover`

Accesors: `altPSI`, `irPIR`, `esPSI`, `joint`, `junctionsPIR`, `junctionsPJU`

[Package ASpli version 2.0.0 Index]