ASpliCounts-class {ASpli} | R Documentation

## Class `"ASpliCounts"`

### Description

Contains results of read overlaps against all feature levels summarization

### Slots

`gene.counts`:

  Object of class `"data.frame"`

`exon.intron.counts`:

  Object of class `"data.frame"`

`junction.counts`:

  Object of class `"data.frame"`

`e1i.counts`:

  Object of class `"data.frame"`

`ie2.counts`:

  Object of class `"data.frame"`

`gene.rd`:

  Object of class `"data.frame"`

`bin.rd`:

  Object of class `"data.frame"`

`condition.order`:

  Object of class `"character"`

`targets`:

  Object of class `"data.frame"`

`.ASpliVersion`:

  ASpli version when this object was created. It should not be modified by the user.

### Methods

AsDiscover

  psi and pir metrics

countsb

  bin counts accesor

countse1i

  e1i counts accesor

countsg

  gene counts accesor

countsie2

  ie2 counts accesor

countsj

  junction counts accesor

DUreport_DEXSeq

  differential expression and usage estimation using DEXSeq

DUreport

  differential expression and usage estimation using DEXSeq

rdsb

  bin read densities accesor

rdsg

  gen read densities acceesor

rds

  compute read densities on genes and bins

writeCounts

  Export count tables

writeRds

  Export read density tables

### Author(s)

Estefania Mancini, Andres Rabinovich, Javier Iserte, Marcelo Yanovsky, Ariel Chernomoretz

[Package ASpli version 2.0.0 Index]