c71c970acffde4bad793f88398e902a8 *DESCRIPTION
4d34e9192892ea2c33815f7fbd1b6de9 *INDEX
6fee5407006cdbf611eab3e3df7acb97 *LICENSE
310cf13fff36ff068d2b96335bb5f099 *Meta/Rd.rds
1d15b8cd6573641f81c4126b0438e9c2 *Meta/features.rds
cf2f118e22f990408849857258de3f08 *Meta/hsearch.rds
2de88ec4fdd030eab7df2f9f6db25cf4 *Meta/links.rds
30a8a0d879b2717a7a463372595ea730 *Meta/nsInfo.rds
2fe5435a01b6d8edfe22d73a827a18c3 *Meta/package.rds
ec269dab8e14bbba11d341fcb6cc30a6 *Meta/vignette.rds
ccb34bc49be65dade7bf567ea32337c8 *NAMESPACE
96bef70c515134fa6b6b61bc3261aec2 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/ALPS
c808304c4a1a89bbe94f871f4c501caf *R/ALPS.rdb
d9644ad6e0b994a4627ab18f6fde0a1a *R/ALPS.rdx
5ab31d887f8e1b94e08e6e460d6b29c6 *doc/ALPS-vignette.R
7ea2d740bb8358702b8099c00bcfb3d8 *doc/ALPS-vignette.Rmd
5f5a53726b45933b7adabe13fc74040b *doc/ALPS-vignette.html
12ed6bb24b412f5c5f504e303ec4fed9 *doc/index.html
c4cc703cd4402476fb4d0ab5a0082592 *extdata/bw/ACCx_025FE5F8_T1.bw
f7c2637e381c96a79e3b5c0b6dc4eb25 *extdata/bw/ACCx_025FE5F8_T2.bw
ef635b92ff09ebfa4393cc5053d32b34 *extdata/bw/ACCx_1.bed
ef635b92ff09ebfa4393cc5053d32b34 *extdata/bw/ACCx_2.bed
9314e8ce47fa6a45160df71422933311 *extdata/bw/ALPS_example_datatable.txt
ff1f3375ca7547ee83d5fd8e0b8f4c71 *extdata/bw/BRCA_000CFD9F_T2.bw
3328ce768cc212f5226d12f4dc864c93 *extdata/bw/BRCA_01112370_T1.bw
f4430a0b9dc7921ec2b09e1df648a301 *extdata/bw/BRCA_1.bed
f4430a0b9dc7921ec2b09e1df648a301 *extdata/bw/BRCA_2.bed
490f0c5d7f94dbd85ce4c37b8493b20a *extdata/bw/GBMx_09C0DCE7_T1.bw
cd15e4c493b7e66612136be4eca3923f *extdata/bw/GBMx_09C0DCE7_T2.bw
f5159bd7773e9d2082768b11b526f5da *extdata/bw/GBMx_1.bed
f5159bd7773e9d2082768b11b526f5da *extdata/bw/GBMx_2.bed
24ccd7429afecbf72e6c32625c608c02 *extdata/bw/LGGx_1.bed
a25476ecb2893ff7d5ce0e0115fcc422 *extdata/bw/LGGx_116B070A_T1.bw
cdf81dbc86f32abf4129f43cad4da50f *extdata/bw/LGGx_116B070A_T2.bw
24ccd7429afecbf72e6c32625c608c02 *extdata/bw/LGGx_2.bed
45bb10fb079caf5ba45b49183c0d77db *extdata/motifs/MA0147.2.jaspar
6591fa16fafac302ddb524e8e4096b66 *extdata/motifs/MA0147.2.meme
969f0989ce659d7a7474a73af0d97179 *extdata/motifs/MA0147.2.pfm
0c72893942d6efe6bab75e260413ce13 *extdata/motifs/MA0147.2.transfac
d68cf9b910d4a12a0729d8a0bae64b43 *extdata/motifs/cmyc.homer
7a1917605c787487c108177c94f8506b *extdata/overlap_violins/data_table_4_overlapviolins.txt
98aea2aba1fb3cc07fb309e5601e268d *extdata/overlap_violins/enrichemnts_4_overlapviolins.txt
805508500e2445e830116317946ce0d2 *figures/README-ALPS-overview.png
2512fbc1221f8dcc6a7621d36bef361f *help/ALPS.rdb
0ba67bf3096efdcd1d4b3599a92736bd *help/ALPS.rdx
51b2df6a0bc39bfe2f9459e55bec5af1 *help/AnIndex
5007e0efd6a702e0604f24768e52b146 *help/aliases.rds
45dccf3045671b294e5604b34ee41bdd *help/paths.rds
b5c7f9094aa953e3ede78d34947169da *html/00Index.html
f2b8548de6edfb5e703a44c578f4fa0a *html/ALPS-package.html
b6763e6916890c631fdc3f2643803b1a *html/R.css
fd23a4e78109aa4ac19f56dfc6bcdbb8 *html/get_genomic_annotations.html
461fe38139bacab674c0d546f64dd6fd *html/get_variable_regions.html
1499fc729687afce8b53bb5f2326cb58 *html/merge_GR.html
b836e9467a06e0a0584266d4cb2d4ab5 *html/multiBigwig_summary.html
3cd9b76f836b528c32ebfe20917774d6 *html/pipe.html
56f5df8421c0e7b07e0d31aa42c3f5e6 *html/plot_browser_tracks.html
b541b211b9ef4f5b20c772cc984e20e5 *html/plot_correlation.html
d9f148a083a93a793234101342045001 *html/plot_enrichments.html
061e3b5bafabf4d357fab5dcca13b2f4 *html/plot_genomic_annotations.html
3f861b81a935493c6bb39594cf37e898 *html/plot_motif_logo.html
0fc93cb071e0bb1abe2fea069ff767b1 *html/process_homer.html
f450d98efb5cf4dc26c478d29bf312f7 *html/process_jaspar.html
01cf008d74caf67e9e450932fea05327 *html/process_meme.html
c09e9d5a82d515881536d259d1d0ad27 *html/process_pfm.html
9acd7c4fdc4bcc1d25ec79809c903e74 *html/process_transfac.html
17c22bfaec515572ffe80e4a74e0a479 *script/DATASET.R
