NormalizeRPM {ADImpute} | R Documentation

## RPM normalization

### Description

`NormalizeRPM` performs RPM normalization, with possibility to log the result

### Usage

    NormalizeRPM(data, sce = NULL, log = FALSE, scale = 1,
    pseudo.count = 1)

### Arguments

`data` | matrix; raw data (genes as rows and samples as columns)
`sce` | SingleCellExperiment; raw data
`log` | logical; log RPMs?
`scale` | integer; scale factor to divide RPMs by
`pseudo.count` | numeric; if `log = TRUE`, value to add to RPMs in order to avoid taking `log(0)`

### Value

matrix; library size normalized data

### Examples

    demo <- NormalizeRPM(ADImpute::demo_data)

[Package ADImpute version 1.0.0 Index]