counts {ABSSeq} | R Documentation

## Accessors for the 'counts' slot of a ABSDataSet object.

### Description

Accessors for the 'counts' slot of a ABSDataSet object, return a matrix

### Usage

    ## S4 method for signature 'ABSDataSet'
    counts(object,norm=FALSE)

    ## S4 replacement method for signature 'ABSDataSet,matrix'
    counts(object)<-value

### Arguments

`object` | a `ABSDataSet` object.
`norm` | logical indicating whether or not to normalize the counts before returning
`value` | an numeric matrix

### Details

The counts slot holds the count data as a matrix of non-negative integer count values, rows and columns for genes and samples, respectively.

### See Also

`sFactors`, `normalFactors`

### Examples

    data(simuN5)
    obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups))
    head(counts(obj))
    counts(obj) <- matrix(1:50,nrow=5,ncol=10)
    head(counts(obj))

[Package ABSSeq version 1.44.0 Index]