# Multi-locus multi-purpose Crispr/Cas design

## Documentation for package ‘multicrispr’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

add_genome_matches | Add genome matches
add_inverse_strand | Add inverse strand
add_seq | Add sequence to GRanges
add_target_matches | Add target matches
bed_to_granges | Read bedfile into GRanges
char_to_granges | Convert character vector into GRanges
double_flank | Double flank
down_flank | Extend or Flank GRanges
dt2gr | GRanges <-> data.table
extend | Extend or Flank GRanges
extend_for_pe | Extend ranges for prime editing
extend_pe_to_gg | Extend prime editing target to find GG sites
extract_matchranges | Extract matching subranges
extract_subranges | Extract subranges
find_gg | Find GG
find_primespacers | Find prime editing spacers
find_spacers | Find crispr spacers in targetranges
genefile_to_granges | Convert geneids into GRanges
genes_to_granges | Convert geneids into GRanges
gr2dt | GRanges <-> data.table
has_been_indexed | Has been indexed?
index_genome | Index genome
index_targets | Index targets
plot_intervals | Interval plot GRanges
plot_karyogram | Karyo/Interval Plot GRanges(List)
read_ranges | Write GRanges to file
score_ontargets | Add on-target efficiency scores
up_flank | Extend or Flank GRanges
write_ranges | Write GRanges to file