# Targeted scRNA-seq primer design for TAP-seq

## Documentation for package ‘TAPseq’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

accessors | Accessors for TsIO objects
beads_oligo | Accessors for TsIO objects
beads_oligo-method | TsIO class
beads_oligo<- | Accessors for TsIO objects
beads_oligo<--method | TsIO class
blastPrimers | Estimate primer off-targets using BLAST
blastPrimers-method | Estimate primer off-targets using BLAST
bone_marrow_genex | Mouse bone marrow 10x data
checkPrimers | Check primers for complementarity
checkPrimers-method | Check primers for complementarity
chr11_genes | Chromosome 11 genes
chr11_polyA_sites | Chromosome 11 polyA sites
chr11_primers | Chromosome 11 primers
chr11_truncated_txs | Chromosome 11 truncated transcripts
chr11_truncated_txs_seq | Chromosome 11 truncated transcript sequences
createBLASTDb | Estimate primer off-targets using BLAST
createIORecord | Create boulder IO record
createIORecord-method | Create boulder IO record
createPrimerTrack | Export TAP-seq primers
createPrimerTrack-method | Export TAP-seq primers
designPrimers | Design primers
designPrimers-method | Design primers
estimateOffTargets | Estimate primer off-targets using BLAST
exportPrimers | Export TAP-seq primers
exportPrimerTrack | Export TAP-seq primers
getTxsSeq | Get transcript sequences
getTxsSeq-method | Get transcript sequences
inferPolyASites | Infer polyA sites from droplet sequencing data
min_primer_region | Accessors for TsIO objects
min_primer_region-method | TsIO class
min_primer_region<- | Accessors for TsIO objects
min_primer_region<--method | TsIO class
pcr_products | Accessors for TsIO objects
pcr_products-method | TsIO class
pcr_products-method | TsIOList class
pickPrimers | Pick best TAP-seq primers
pickPrimers-method | Pick best TAP-seq primers
plotTargetGenes | Select target genes
primerDataFrame | Export TAP-seq primers
primerDataFrame-method | Export TAP-seq primers
primer_max_tm | Accessors for TsIO objects
primer_max_tm-method | TsIO class
primer_max_tm<- | Accessors for TsIO objects
primer_max_tm<--method | TsIO class
primer_min_tm | Accessors for TsIO objects
primer_min_tm-method | TsIO class
primer_min_tm<- | Accessors for TsIO objects
primer_min_tm<--method | TsIO class
primer_num_return | Accessors for TsIO objects
primer_num_return-method | TsIO class
primer_num_return<- | Accessors for TsIO objects
primer_num_return<--method | TsIO class
primer_opt_tm | Accessors for TsIO objects
primer_opt_tm-method | TsIO class
primer_opt_tm<- | Accessors for TsIO objects
primer_opt_tm<--method | TsIO class
product_size_range | Accessors for TsIO objects
product_size_range-method | TsIO class
product_size_range<- | Accessors for TsIO objects
product_size_range<--method | TsIO class
reverse_primer | Accessors for TsIO objects
reverse_primer-method | TsIO class
reverse_primer<- | Accessors for TsIO objects
reverse_primer<--method | TsIO class
selectTargetGenes | Select target genes
sequence_id | Accessors for TsIO objects
sequence_id-method | TsIO class
sequence_id-method | TsIOList class
sequence_id<- | Accessors for TsIO objects
sequence_id<--method | TsIO class
sequence_template | Accessors for TsIO objects
sequence_template-method | TsIO class
sequence_template-method | TsIOList class
TAPseq | TAPseq: R-package to design primers for TAP-seq
TAPseqInput | Create TAPseq input from target sequences
tapseq_primers | Accessors for TsIO objects
tapseq_primers-method | TsIO class
tapseq_primers-method | TsIOList class
target_annot | Accessors for TsIO objects
target_annot-method | TsIO class
target_annot-method | TsIOList class
target_annot<- | Accessors for TsIO objects
target_annot<--method | TsIO class
target_sequence | Accessors for TsIO objects
target_sequence-method | TsIO class
target_sequence-method | TsIOList class
target_sequence<- | Accessors for TsIO objects
target_sequence<--method | TsIO class
truncateTxsPolyA | Truncate transcripts at polyA sites
truncateTxsPolyA-method | Truncate transcripts at polyA sites
TsIO | TsIO class
TsIO-class | TsIO class
TsIOList | TsIOList class
TsIOList-class | TsIOList class