citHeader("If you use OncoSimulR, please cite the OncoSimulR Bioinformatics paper.",
          " OncoSimulR has been used in two large",
          " comparative studies of methods to infer restrictions in",
          " the order of accumulation of mutations (cancer progression models)",
          " published in Bioinformatics and BMC Bioinformatics; you might want to cite those too,",
          " if appropriate, such as when referring to using evolutionary simulations",
          " to assess oncogenetic tree/cancer progression methods performance.")


citEntry(entry="Article",
         author = "R Diaz-Uriarte",
         title = "OncoSimulR: genetic simulation with arbitrary epistasis and mutator genes in asexual populations.",
         journal = "Bioinformatics",
         year = "2017",
         volume = "33",
         number = "12",
         pages = "1898--1899",
         doi = "10.1093/bioinformatics/btx077",
         publisher = "Oxford University Press",
         url = " https://doi.org/10.1093/bioinformatics/btx077",
         textVersion = paste("R Diaz-Uriarte.",
                             "OncoSimulR: genetic simulation with arbitrary epistasis and mutator genes in asexual populations.",
                             " 2017. Bioinformatics, 33, 1898--1899. https://doi.org/10.1093/bioinformatics/btx077.")
         )



## citHeader("A former version of OncoSimulR has been used in this paper:")


citEntry(entry="Article",
         author = "R Diaz-Uriarte",
         title = "Cancer progression models and fitness landscapes: a many-to-many relationship",
         journal = "Bioinformatics",
         year = "2017",
         doi = "10.1093/bioinformatics/btx663",
         url = "https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btx663/",
##         volume = "zz",
##         number = "zz",
         textVersion = paste("R Diaz-Uriarte.",
                             "Cancer progression models and fitness landscapes: a many-to-many relationship",
                             "2017", "Bioinformatics.",
                             "https://academic.oup.com/bioinformatics/advance-article/doi/10.1093/bioinformatics/btx663/")
)


citEntry(entry="Article",
         author = "R Diaz-Uriarte",
         title = "Identifying restrictions in the order of accumulation of mutations during tumor progression: effects of passengers, evolutionary models, and sampling",
         journal = "BMC Bioinformatics",
         year = "2015",
         doi = "10.1186/s12859-015-0466-7",
         url = "http://www.biomedcentral.com/1471-2105/16/41/abstract",
         volume = "16",
         number = "41",
         textVersion = paste("R Diaz-Uriarte.",
             "Identifying restrictions in the order of accumulation of mutations during tumor progression: effects of passengers, evolutionary models, and sampling",
             "BMC Bioinformatics, 16(41), 2015.")
)
