Package: BitSeq
Type: Package
Title: Transcript expression inference and differential expression
        analysis for RNA-seq data
Version: 1.34.0
Date: 2020-04-04
Author: Peter Glaus, Antti Honkela and Magnus Rattray
Maintainer: Antti Honkela <antti.honkela@helsinki.fi>, Panagiotis Papastamoulis <papastamoulis@aueb.gr>
Description: The BitSeq package is targeted for transcript expression
        analysis and differential expression analysis of RNA-seq data
        in two stage process. In the first stage it uses Bayesian
        inference methodology to infer expression of individual
        transcripts from individual RNA-seq experiments. The second
        stage of BitSeq embraces the differential expression analysis
        of transcript expression. Providing expression estimates from
        replicates of multiple conditions, Log-Normal model of the
        estimates is used for inferring the condition mean transcript
        expression and ranking the transcripts based on the likelihood
        of differential expression.
License: Artistic-2.0 + file LICENSE
biocViews: ImmunoOncology, GeneExpression, DifferentialExpression,
        Sequencing, RNASeq, Bayesian, AlternativeSplicing,
        DifferentialSplicing, Transcription
Depends: Rsamtools (>= 1.99.3)
Imports: S4Vectors, IRanges
LinkingTo: Rhtslib (>= 1.15.5)
SystemRequirements: GNU make
Suggests: edgeR, DESeq, BiocStyle
git_url: https://git.bioconductor.org/packages/BitSeq
git_branch: RELEASE_3_12
git_last_commit: 46472fc
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: yes
Packaged: 2020-10-27 23:03:44 UTC; biocbuild
Built: R 4.0.3; x86_64-apple-darwin17.0; 2020-10-28 12:29:55 UTC; unix
