checkTissuesToMerge {yarn} | R Documentation

## Check tissues to merge based on gene expression profile

### Description

Check tissues to merge based on gene expression profile

### Usage

    checkTissuesToMerge(obj, majorGroups, minorGroups, filterFun = NULL,
      plotFlag = TRUE, ...)

### Arguments

`obj` | ExpressionSet object.
`majorGroups` | Column name in the phenoData slot that describes the general body region or site of the sample.
`minorGroups` | Column name in the phenoData slot that describes the specific body region or site of the sample.
`filterFun` | Filter group specific genes that might disrupt PCoA analysis.
`plotFlag` | TRUE/FALSE whether to plot or not
`...` | Parameters that can go to `checkMisAnnotation`

### Value

CMDS Plots of the majorGroupss colored by the minorGroupss. Optional matrix of CMDS loadings for each comparison.

### See Also

checkTissuesToMerge

### Examples

    data(skin)
    checkTissuesToMerge(skin,'SMTS','SMTSD')

[Package yarn version 1.13.0 Index]