getXcmsRaw-methods {xcms} | R Documentation

## Load the raw data for one or more files in the xcmsSet

### Description

Reads the raw data applies evential retention time corrections and waters Lock mass correction and returns it as an `xcmsRaw` object (or list of `xcmsRaw` objects) for one or more files of the `xcmsSet` object.

### Arguments

`object` | the `xcmsSet` object
`sampleidx` | The index of the sample for which the raw data should be returned. Can be a single number or a numeric vector with the indices. Alternatively, the file name can be specified.
`profmethod` | The profile method.
`profstep` | The profile step.
`rt` | Whether corrected or raw retention times should be returned.
`...` | Additional arguments submitted to the `xcmsRaw` function.

### Value

A single `xcmsRaw` object or a list of `xcmsRaw` objects.

### Methods

object = "xcmsSet"

  `getXcmsRaw(object, sampleidx=1, profmethod=profinfo(object)$method, profstep=profinfo(object)$step, rt=c("corrected", "raw"), ... )`

### Author(s)

Johannes Rainer, johannes.rainer@eurac.edu

### See Also

`xcmsRaw-class`,

[Package xcms version 3.9.1 Index]